Project measure / variable:   Bolivar2   act_cued_mean

ID, description, units MPD:63920   act_cued_mean   activity (beam breaks) during 1 min period of cued conditioning on day 2   [n]  mean  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of cued conditioning on day 2 mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means41.087   n 48.984   n
Median of the strain means42.638   n 50.83   n
SD of the strain means± 19.243 ± 21.024
Coefficient of variation (CV)0.4684 0.4292
Min–max range of strain means3.7033   –   62.11   n 7.7228   –   75.35   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4488.9392 4488.9392 9.9544 0.0018
strain 7 83198.4398 11885.4914 26.3566 < 0.0001
sex:strain 7 19157.152 2736.736 6.0688 < 0.0001
Residuals 272 122658.388 450.95


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.7033 4.2261   18 0.99611 1.1412 -1.94
129S1/SvImJ m 7.7228 7.4167   18 1.7481 0.9604 -1.96
A/J f 59.83 27.94   18 6.5855 0.467 14.67, 107.0 0.97
A/J m 51.06 22.5   18 5.3032 0.4407 0.67, 98.67 0.1
BALB/cByJ f 32.425 23.136   18 5.4532 0.7135 5.33, 98.33 -0.45
BALB/cByJ m 34.869 18.172   18 4.2833 0.5212 8.67, 69.0 -0.67
C3H/HeJ f 53.54 20.743   18 4.8892 0.3874 18.67, 86.0 0.65
C3H/HeJ m 52.06 24.178   18 5.6988 0.4645 16.0, 100.67 0.15
C57BL/6J f 36.296 13.118   18 3.0919 0.3614 16.0, 59.33 -0.25
C57BL/6J m 49.314 18.666   18 4.3995 0.3785 20.33, 82.33 0.02
CBA/J f 62.11 27.177   18 6.4056 0.4375 12.33, 109.0 1.09
CBA/J m 50.59 27.898   18 6.5755 0.5514 13.0, 107.0 0.08
DBA/2J f 31.814 13.459   18 3.1723 0.423 3.0, 53.33 -0.48
DBA/2J m 70.91 26.723   18 6.2987 0.3769 29.33, 120.67 1.04
FVB/NJ f 48.98 18.302   18 4.3139 0.3737 25.33, 86.0 0.41
FVB/NJ m 75.35 26.599   18 6.2695 0.353 31.67, 126.67 1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.7033 5.0053 13.5573 -6.1507
129S1/SvImJ m 7.7228 5.0053 17.5768 -2.1312
A/J f 59.8344 5.0053 69.6884 49.9804
A/J m 51.0567 5.0053 60.9107 41.2027
BALB/cByJ f 32.425 5.0053 42.279 22.571
BALB/cByJ m 34.8689 5.0053 44.7229 25.0149
C3H/HeJ f 53.5372 5.0053 63.3912 43.6832
C3H/HeJ m 52.0556 5.0053 61.9096 42.2016
C57BL/6J f 36.2961 5.0053 46.1501 26.4421
C57BL/6J m 49.3144 5.0053 59.1684 39.4604
CBA/J f 62.1122 5.0053 71.9662 52.2582
CBA/J m 50.5922 5.0053 60.4462 40.7382
DBA/2J f 31.8144 5.0053 41.6684 21.9604
DBA/2J m 70.9078 5.0053 80.7618 61.0538
FVB/NJ f 48.98 5.0053 58.834 39.126
FVB/NJ m 75.3522 5.0053 85.2062 65.4982


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.7131 3.5393 12.6809 -1.2548
A/J both 55.4456 3.5393 62.4134 48.4777
BALB/cByJ both 33.6469 3.5393 40.6148 26.6791
C3H/HeJ both 52.7964 3.5393 59.7642 45.8286
C57BL/6J both 42.8053 3.5393 49.7731 35.8374
CBA/J both 56.3522 3.5393 63.3201 49.3844
DBA/2J both 51.3611 3.5393 58.3289 44.3933
FVB/NJ both 62.1661 3.5393 69.1339 55.1983




  GWAS USING LINEAR MIXED MODELS