Project measure / variable:   Bolivar2   act_cued_2

ID, description, units MPD:63918   act_cued_2   activity (beam breaks) during 1 min period of cued conditioning on day 2   [n]  2nd min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of cued conditioning on day 2 2nd min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means42.821   n 50.81   n
Median of the strain means45.223   n 54.05   n
SD of the strain means± 21.902 ± 21.148
Coefficient of variation (CV)0.5115 0.4162
Min–max range of strain means2.8333   –   71.28   n 9.6667   –   76.83   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4600.0035 4600.0035 5.2186 0.0231
strain 7 95384.9965 13626.4281 15.4589 < 0.0001
sex:strain 7 21411.3021 3058.7574 3.4701 0.0014
Residuals 272 239756.9444 881.4594


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.8333 3.989   18 0.94021 1.4079 -1.83
129S1/SvImJ m 9.6667 13.227   18 3.1175 1.3683 -1.95
A/J f 62.67 34.327   18 8.091 0.5478 6.0, 126.0 0.91
A/J m 52.72 35.541   18 8.3771 0.6741 0.09
BALB/cByJ f 29.278 25.564   18 6.0254 0.8731 2.0, 97.0 -0.62
BALB/cByJ m 33.389 22.008   18 5.1874 0.6592 2.0, 83.0 -0.82
C3H/HeJ f 54.67 22.814   18 5.3773 0.4173 16.0, 100.0 0.54
C3H/HeJ m 62.33 33.308   18 7.8507 0.5344 11.0, 110.0 0.54
C57BL/6J f 38.556 19.794   18 4.6654 0.5134 11.0, 81.0 -0.19
C57BL/6J m 48.222 30.331   18 7.149 0.629 9.0, 104.0 -0.12
CBA/J f 71.28 39.504   18 9.3112 0.5542 12.0, 133.0 1.3
CBA/J m 55.39 39.576   18 9.3281 0.7145 4.0, 151.0 0.22
DBA/2J f 31.389 19.162   18 4.5166 0.6105 -0.52
DBA/2J m 76.83 40.948   18 9.6515 0.5329 19.0, 161.0 1.23
FVB/NJ f 51.89 32.112   18 7.5688 0.6189 8.0, 126.0 0.41
FVB/NJ m 67.94 34.49   18 8.1295 0.5076 18.0, 130.0 0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.8333 6.9979 16.6102 -10.9435
129S1/SvImJ m 9.6667 6.9979 23.4435 -4.1102
A/J f 62.6667 6.9979 76.4435 48.8898
A/J m 52.7222 6.9979 66.4991 38.9454
BALB/cByJ f 29.2778 6.9979 43.0546 15.5009
BALB/cByJ m 33.3889 6.9979 47.1657 19.612
C3H/HeJ f 54.6667 6.9979 68.4435 40.8898
C3H/HeJ m 62.3333 6.9979 76.1102 48.5565
C57BL/6J f 38.5556 6.9979 52.3324 24.7787
C57BL/6J m 48.2222 6.9979 61.9991 34.4454
CBA/J f 71.2778 6.9979 85.0546 57.5009
CBA/J m 55.3889 6.9979 69.1657 41.612
DBA/2J f 31.3889 6.9979 45.1657 17.612
DBA/2J m 76.8333 6.9979 90.6102 63.0565
FVB/NJ f 51.8889 6.9979 65.6657 38.112
FVB/NJ m 67.9444 6.9979 81.7213 54.1676


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.25 4.9482 15.9917 -3.4917
A/J both 57.6944 4.9482 67.4361 47.9527
BALB/cByJ both 31.3333 4.9482 41.075 21.5916
C3H/HeJ both 58.5 4.9482 68.2417 48.7583
C57BL/6J both 43.3889 4.9482 53.1306 33.6472
CBA/J both 63.3333 4.9482 73.075 53.5916
DBA/2J both 54.1111 4.9482 63.8528 44.3694
FVB/NJ both 59.9167 4.9482 69.6584 50.175




  GWAS USING LINEAR MIXED MODELS