Project measure / variable:   Bolivar2   act_cued_1

ID, description, units MPD:63917   act_cued_1   activity (beam breaks) during 1 min period of cued conditioning on day 2   [n]  1st min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of cued conditioning on day 2 1st min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means41.972   n 50.2   n
Median of the strain means46.361   n 49.528   n
SD of the strain means± 20.001 ± 23.521
Coefficient of variation (CV)0.4765 0.4685
Min–max range of strain means4.2222   –   69.28   n 7.3889   –   90.56   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4875.7812 4875.7812 7.3171 0.0073
strain 7 86342.7465 12334.6781 18.5106 < 0.0001
sex:strain 7 33765.1354 4823.5908 7.2387 < 0.0001
Residuals 272 181249.1667 666.3572


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.2222 4.9889   18 1.1759 1.1816 -1.89
129S1/SvImJ m 7.3889 9.617   18 2.2668 1.3016 -1.82
A/J f 69.28 35.403   18 8.3446 0.511 22.0, 158.0 1.37
A/J m 46.222 27.351   18 6.4466 0.5917 2.0, 89.0 -0.17
BALB/cByJ f 46.222 24.043   18 5.667 0.5202 7.0, 94.0 0.21
BALB/cByJ m 47.556 26.525   18 6.2519 0.5578 5.0, 94.0 -0.11
C3H/HeJ f 46.5 30.322   18 7.147 0.6521 5.0, 110.0 0.23
C3H/HeJ m 39.444 26.704   18 6.2941 0.677 4.0, 108.0 -0.46
C57BL/6J f 37.611 19.184   18 4.5217 0.5101 5.0, 73.0 -0.22
C57BL/6J m 52.44 32.657   18 7.6974 0.6227 10.0, 126.0 0.1
CBA/J f 57.83 27.374   18 6.4521 0.4733 12.0, 127.0 0.79
CBA/J m 51.5 29.064   18 6.8505 0.5644 12.0, 123.0 0.06
DBA/2J f 25.389 12.876   18 3.0348 0.5071 5.0, 51.0 -0.83
DBA/2J m 66.5 32.111   18 7.5685 0.4829 19.0, 124.0 0.69
FVB/NJ f 48.722 17.703   18 4.1726 0.3633 16.0, 83.0 0.34
FVB/NJ m 90.56 33.014   18 7.7814 0.3646 30.0, 149.0 1.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.2222 6.0844 16.2007 -7.7563
129S1/SvImJ m 7.3889 6.0844 19.3674 -4.5896
A/J f 69.2778 6.0844 81.2563 57.2993
A/J m 46.2222 6.0844 58.2007 34.2437
BALB/cByJ f 46.2222 6.0844 58.2007 34.2437
BALB/cByJ m 47.5556 6.0844 59.534 35.5771
C3H/HeJ f 46.5 6.0844 58.4785 34.5215
C3H/HeJ m 39.4444 6.0844 51.4229 27.466
C57BL/6J f 37.6111 6.0844 49.5896 25.6326
C57BL/6J m 52.4444 6.0844 64.4229 40.466
CBA/J f 57.8333 6.0844 69.8118 45.8548
CBA/J m 51.5 6.0844 63.4785 39.5215
DBA/2J f 25.3889 6.0844 37.3674 13.4104
DBA/2J m 66.5 6.0844 78.4785 54.5215
FVB/NJ f 48.7222 6.0844 60.7007 36.7437
FVB/NJ m 90.5556 6.0844 102.534 78.5771


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.8056 4.3023 14.2756 -2.6645
A/J both 57.75 4.3023 66.2201 49.2799
BALB/cByJ both 46.8889 4.3023 55.359 38.4188
C3H/HeJ both 42.9722 4.3023 51.4423 34.5022
C57BL/6J both 45.0278 4.3023 53.4978 36.5577
CBA/J both 54.6667 4.3023 63.1367 46.1966
DBA/2J both 45.9444 4.3023 54.4145 37.4744
FVB/NJ both 69.6389 4.3023 78.109 61.1688




  GWAS USING LINEAR MIXED MODELS