Project measure / variable:   Bolivar2   act_altered_mean

ID, description, units MPD:63916   act_altered_mean   activity (beam breaks) during 1 min period of altered context on day 2   [n]  mean  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of altered context on day 2 mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means109.3   n 113.2   n
Median of the strain means113.3   n 120.5   n
SD of the strain means± 29.796 ± 32.339
Coefficient of variation (CV)0.2726 0.2857
Min–max range of strain means54.06   –   144.7   n 58.22   –   147.4   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1106.8905 1106.8905 1.7862 0.1825
strain 7 240675.0768 34382.1538 55.4823 < 0.0001
sex:strain 7 3090.5486 441.5069 0.7125 0.6615
Residuals 272 168557.3362 619.6961


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 54.06 26.009   18 6.1304 0.4811 18.0, 109.67 -1.85
129S1/SvImJ m 58.22 35.912   18 8.4645 0.6168 11.67, 143.67 -1.7
A/J f 79.3 23.166   18 5.4603 0.2921 34.67, 117.33 -1.01
A/J m 72.33 28.156   18 6.6364 0.3892 26.67, 123.67 -1.26
BALB/cByJ f 144.7 25.966   18 6.1202 0.1794 91.0, 185.0 1.19
BALB/cByJ m 147.4 33.614   18 7.9228 0.228 75.33, 215.0 1.06
C3H/HeJ f 113.2 15.978   18 3.7661 0.1412 92.0, 158.67 0.13
C3H/HeJ m 110.3 21.941   18 5.1715 0.1989 63.0, 142.33 -0.09
C57BL/6J f 113.4 28.82   18 6.793 0.2542 68.33, 153.67 0.14
C57BL/6J m 127.3 21.578   18 5.0859 0.1695 85.67, 161.33 0.44
CBA/J f 136.9 25.225   18 5.9455 0.1842 94.33, 184.33 0.93
CBA/J m 139.8 25.011   18 5.8951 0.1789 84.33, 178.0 0.82
DBA/2J f 108.8 20.893   18 4.9246 0.1921 58.67, 133.0 -0.02
DBA/2J m 113.8 27.68   18 6.5242 0.2432 63.67, 167.67 0.02
FVB/NJ f 124.0 12.284   18 2.8955 0.0991 99.67, 148.67 0.49
FVB/NJ m 136.5 12.929   18 3.0474 0.0947 112.33, 159.0 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 54.0572 5.8675 65.6087 42.5057
129S1/SvImJ m 58.2228 5.8675 69.7743 46.6713
A/J f 79.2967 5.8675 90.8482 67.7452
A/J m 72.3339 5.8675 83.8854 60.7824
BALB/cByJ f 144.7406 5.8675 156.292 133.1891
BALB/cByJ m 147.4444 5.8675 158.9959 135.893
C3H/HeJ f 113.185 5.8675 124.7365 101.6335
C3H/HeJ m 110.2961 5.8675 121.8476 98.7446
C57BL/6J f 113.39 5.8675 124.9415 101.8385
C57BL/6J m 127.3139 5.8675 138.8654 115.7624
CBA/J f 136.9428 5.8675 148.4943 125.3913
CBA/J m 139.7767 5.8675 151.3282 128.2252
DBA/2J f 108.7778 5.8675 120.3293 97.2263
DBA/2J m 113.815 5.8675 125.3665 102.2635
FVB/NJ f 123.9639 5.8675 135.5154 112.4124
FVB/NJ m 136.5183 5.8675 148.0698 124.9668


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 56.14 4.1489 64.3081 47.9719
A/J both 75.8153 4.1489 83.9834 67.6471
BALB/cByJ both 146.0925 4.1489 154.2606 137.9244
C3H/HeJ both 111.7406 4.1489 119.9087 103.5724
C57BL/6J both 120.3519 4.1489 128.5201 112.1838
CBA/J both 138.3597 4.1489 146.5279 130.1916
DBA/2J both 111.2964 4.1489 119.4645 103.1283
FVB/NJ both 130.2411 4.1489 138.4092 122.073




  GWAS USING LINEAR MIXED MODELS