Project measure / variable:   Bolivar2   act_altered_2

ID, description, units MPD:63914   act_altered_2   activity (beam breaks) during 1 min period of altered context on day 2   [n]  2nd min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of altered context on day 2 2nd min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means101.6   n 104.1   n
Median of the strain means105.5   n 117.2   n
SD of the strain means± 33.153 ± 31.16
Coefficient of variation (CV)0.3264 0.2992
Min–max range of strain means39.667   –   143.4   n 52.5   –   132.1   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 472.7812 472.7812 0.4596 0.4984
strain 7 254349.191 36335.5987 35.3203 < 0.0001
sex:strain 7 6570.3576 938.6225 0.9124 0.4972
Residuals 272 279818.8333 1028.7457


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 39.667 32.786   18 7.7278 0.8265 8.0, 97.0 -1.87
129S1/SvImJ m 52.5 45.323   18 10.683 0.8633 4.0, 158.0 -1.66
A/J f 67.67 30.477   18 7.1834 0.4504 6.0, 104.0 -1.02
A/J m 61.22 29.053   18 6.8478 0.4745 18.0, 111.0 -1.38
BALB/cByJ f 143.4 28.515   18 6.721 0.1988 80.0, 188.0 1.26
BALB/cByJ m 132.1 51.33   18 12.099 0.3887 39.0, 215.0 0.9
C3H/HeJ f 105.3 24.932   18 5.8766 0.2368 48.0, 151.0 0.11
C3H/HeJ m 98.06 22.833   18 5.3818 0.2329 63.0, 128.0 -0.19
C57BL/6J f 104.7 33.177   18 7.8198 0.3168 46.0, 153.0 0.09
C57BL/6J m 120.3 28.22   18 6.6515 0.2345 56.0, 166.0 0.52
CBA/J f 124.2 37.821   18 8.9145 0.3045 46.0, 182.0 0.68
CBA/J m 124.0 37.588   18 8.8595 0.3031 46.0, 171.0 0.64
DBA/2J f 105.8 28.091   18 6.621 0.2654 51.0, 148.0 0.13
DBA/2J m 114.0 26.71   18 6.2956 0.2343 62.0, 154.0 0.32
FVB/NJ f 121.8 17.778   18 4.1904 0.146 80.0, 152.0 0.61
FVB/NJ m 130.9 20.206   18 4.7626 0.1543 89.0, 161.0 0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 39.6667 7.5599 54.5501 24.7833
129S1/SvImJ m 52.5 7.5599 67.3834 37.6166
A/J f 67.6667 7.5599 82.5501 52.7833
A/J m 61.2222 7.5599 76.1056 46.3388
BALB/cByJ f 143.4444 7.5599 158.3279 128.561
BALB/cByJ m 132.0556 7.5599 146.939 117.1721
C3H/HeJ f 105.2778 7.5599 120.1612 90.3944
C3H/HeJ m 98.0556 7.5599 112.939 83.1721
C57BL/6J f 104.7222 7.5599 119.6056 89.8388
C57BL/6J m 120.3333 7.5599 135.2167 105.4499
CBA/J f 124.2222 7.5599 139.1056 109.3388
CBA/J m 124.0 7.5599 138.8834 109.1166
DBA/2J f 105.8333 7.5599 120.7167 90.9499
DBA/2J m 114.0 7.5599 128.8834 99.1166
FVB/NJ f 121.7778 7.5599 136.6612 106.8944
FVB/NJ m 130.9444 7.5599 145.8279 116.061


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 46.0833 5.3457 56.6075 35.5592
A/J both 64.4444 5.3457 74.9686 53.9203
BALB/cByJ both 137.75 5.3457 148.2742 127.2258
C3H/HeJ both 101.6667 5.3457 112.1908 91.1425
C57BL/6J both 112.5278 5.3457 123.0519 102.0036
CBA/J both 124.1111 5.3457 134.6353 113.5869
DBA/2J both 109.9167 5.3457 120.4408 99.3925
FVB/NJ both 126.3611 5.3457 136.8853 115.8369




  GWAS USING LINEAR MIXED MODELS