Project measure / variable:   Bolivar2   act_context_5

ID, description, units MPD:63910   act_context_5   activity (beam breaks) during 1 min period of contextual conditioning on day 2   [n]  5th min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of contextual conditioning on day 2 5th min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means54.24   n 62.11   n
Median of the strain means59.53   n 64.97   n
SD of the strain means± 25.412 ± 25.259
Coefficient of variation (CV)0.4685 0.4067
Min–max range of strain means10.056   –   91.06   n 20.278   –   98.0   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4465.125 4465.125 5.7171 0.0175
strain 7 150164.0417 21452.006 27.4668 < 0.0001
sex:strain 7 11594.0417 1656.2917 2.1207 0.0417
Residuals 272 212436.1111 781.0151


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.056 8.4955   18 2.0024 0.8449 -1.74
129S1/SvImJ m 20.278 18.821   18 4.436 0.9281 1.0, 69.0 -1.66
A/J f 30.278 22.449   18 5.2914 0.7414 5.0, 86.0 -0.94
A/J m 38.278 19.541   18 4.6059 0.5105 10.0, 77.0 -0.94
BALB/cByJ f 59.78 31.826   18 7.5014 0.5324 14.0, 123.0 0.22
BALB/cByJ m 55.22 40.892   18 9.6384 0.7405 -0.27
C3H/HeJ f 59.28 25.095   18 5.9149 0.4233 15.0, 97.0 0.2
C3H/HeJ m 76.33 26.131   18 6.1591 0.3423 28.0, 110.0 0.56
C57BL/6J f 44.056 28.532   18 6.725 0.6476 4.0, 87.0 -0.4
C57BL/6J m 52.83 19.666   18 4.6352 0.3722 22.0, 83.0 -0.37
CBA/J f 91.06 33.782   18 7.9625 0.371 43.0, 155.0 1.45
CBA/J m 74.72 35.34   18 8.3297 0.473 10.0, 123.0 0.5
DBA/2J f 68.94 31.96   18 7.5331 0.4636 27.0, 133.0 0.58
DBA/2J m 98.0 19.713   18 4.6463 0.2011 52.0, 143.0 1.42
FVB/NJ f 70.44 37.772   18 8.903 0.5362 13.0, 129.0 0.64
FVB/NJ m 81.22 27.544   18 6.4921 0.3391 36.0, 122.0 0.76


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.0556 6.5871 23.0237 -2.9126
129S1/SvImJ m 20.2778 6.5871 33.2459 7.3096
A/J f 30.2778 6.5871 43.2459 17.3096
A/J m 38.2778 6.5871 51.2459 25.3096
BALB/cByJ f 59.7778 6.5871 72.7459 46.8096
BALB/cByJ m 55.2222 6.5871 68.1904 42.2541
C3H/HeJ f 59.2778 6.5871 72.2459 46.3096
C3H/HeJ m 76.3333 6.5871 89.3015 63.3652
C57BL/6J f 44.0556 6.5871 57.0237 31.0874
C57BL/6J m 52.8333 6.5871 65.8015 39.8652
CBA/J f 91.0556 6.5871 104.0237 78.0874
CBA/J m 74.7222 6.5871 87.6904 61.7541
DBA/2J f 68.9444 6.5871 81.9126 55.9763
DBA/2J m 98.0 6.5871 110.9682 85.0318
FVB/NJ f 70.4444 6.5871 83.4126 57.4763
FVB/NJ m 81.2222 6.5871 94.1904 68.2541


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 15.1667 4.6578 24.3365 5.9968
A/J both 34.2778 4.6578 43.4476 25.1079
BALB/cByJ both 57.5 4.6578 66.6699 48.3301
C3H/HeJ both 67.8056 4.6578 76.9754 58.6357
C57BL/6J both 48.4444 4.6578 57.6143 39.2746
CBA/J both 82.8889 4.6578 92.0588 73.719
DBA/2J both 83.4722 4.6578 92.6421 74.3024
FVB/NJ both 75.8333 4.6578 85.0032 66.6635




  GWAS USING LINEAR MIXED MODELS