Project measure / variable:   Bolivar2   act_context_4

ID, description, units MPD:63909   act_context_4   activity (beam breaks) during 1 min period of contextual conditioning on day 2   [n]  4th min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of contextual conditioning on day 2 4th min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means55.71   n 58.83   n
Median of the strain means64.06   n 52.34   n
SD of the strain means± 23.578 ± 26.067
Coefficient of variation (CV)0.4233 0.4431
Min–max range of strain means15.0   –   89.11   n 23.722   –   92.83   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 700.0035 700.0035 0.8571 0.3554
strain 7 134745.8854 19249.4122 23.5707 < 0.0001
sex:strain 7 20925.3576 2989.3368 3.6604 0.0009
Residuals 272 222133.1667 816.6661


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.0 10.6   18 2.4984 0.7066 1.0, 46.0 -1.73
129S1/SvImJ m 23.722 18.808   18 4.4331 0.7928 1.0, 73.0 -1.35
A/J f 40.0 27.105   18 6.3888 0.6776 10.0, 97.0 -0.67
A/J m 36.944 20.949   18 4.9378 0.5671 5.0, 69.0 -0.84
BALB/cByJ f 69.83 34.78   18 8.1978 0.498 10.0, 138.0 0.6
BALB/cByJ m 43.5 29.119   18 6.8634 0.6694 2.0, 88.0 -0.59
C3H/HeJ f 66.67 22.752   18 5.3627 0.3413 30.0, 104.0 0.46
C3H/HeJ m 61.17 29.456   18 6.9429 0.4816 15.0, 128.0 0.09
C57BL/6J f 36.167 22.555   18 5.3163 0.6236 3.0, 85.0 -0.83
C57BL/6J m 42.833 23.155   18 5.4577 0.5406 6.0, 89.0 -0.61
CBA/J f 89.11 31.042   18 7.3168 0.3484 27.0, 138.0 1.42
CBA/J m 80.17 38.316   18 9.0313 0.478 5.0, 135.0 0.82
DBA/2J f 61.44 24.848   18 5.8568 0.4044 17.0, 109.0 0.24
DBA/2J m 92.83 30.918   18 7.2874 0.333 45.0, 152.0 1.3
FVB/NJ f 67.44 41.305   18 9.7358 0.6124 20.0, 136.0 0.5
FVB/NJ m 89.44 35.042   18 8.2594 0.3918 22.0, 153.0 1.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.0 6.7358 28.2608 1.7392
129S1/SvImJ m 23.7222 6.7358 36.9831 10.4614
A/J f 40.0 6.7358 53.2608 26.7392
A/J m 36.9444 6.7358 50.2053 23.6836
BALB/cByJ f 69.8333 6.7358 83.0942 56.5725
BALB/cByJ m 43.5 6.7358 56.7608 30.2392
C3H/HeJ f 66.6667 6.7358 79.9275 53.4058
C3H/HeJ m 61.1667 6.7358 74.4275 47.9058
C57BL/6J f 36.1667 6.7358 49.4275 22.9058
C57BL/6J m 42.8333 6.7358 56.0942 29.5725
CBA/J f 89.1111 6.7358 102.3719 75.8503
CBA/J m 80.1667 6.7358 93.4275 66.9058
DBA/2J f 61.4444 6.7358 74.7053 48.1836
DBA/2J m 92.8333 6.7358 106.0942 79.5725
FVB/NJ f 67.4444 6.7358 80.7053 54.1836
FVB/NJ m 89.4444 6.7358 102.7053 76.1836


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 19.3611 4.7629 28.7379 9.9843
A/J both 38.4722 4.7629 47.849 29.0954
BALB/cByJ both 56.6667 4.7629 66.0435 47.2898
C3H/HeJ both 63.9167 4.7629 73.2935 54.5398
C57BL/6J both 39.5 4.7629 48.8768 30.1232
CBA/J both 84.6389 4.7629 94.0157 75.2621
DBA/2J both 77.1389 4.7629 86.5157 67.7621
FVB/NJ both 78.4444 4.7629 87.8213 69.0676




  GWAS USING LINEAR MIXED MODELS