Project measure / variable:   Bolivar2   act_context_3

ID, description, units MPD:63908   act_context_3   activity (beam breaks) during 1 min period of contextual conditioning on day 2   [n]  3rd min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of contextual conditioning on day 2 3rd min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means53.21   n 56.81   n
Median of the strain means58.61   n 50.47   n
SD of the strain means± 23.489 ± 25.135
Coefficient of variation (CV)0.4415 0.4425
Min–max range of strain means11.889   –   89.72   n 23.167   –   88.56   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 931.6806 931.6806 1.0771 0.3003
strain 7 141494.7083 20213.5298 23.368 < 0.0001
sex:strain 7 7616.9306 1088.1329 1.2579 0.2715
Residuals 272 235282.6667 865.0098


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.889 11.071   18 2.6095 0.9312 -1.76
129S1/SvImJ m 23.167 21.92   18 5.1667 0.9462 -1.34
A/J f 40.444 24.625   18 5.8041 0.6089 5.0, 93.0 -0.54
A/J m 39.611 24.125   18 5.6863 0.609 10.0, 92.0 -0.68
BALB/cByJ f 54.94 34.216   18 8.0649 0.6227 4.0, 110.0 0.07
BALB/cByJ m 40.722 27.099   18 6.3872 0.6654 5.0, 96.0 -0.64
C3H/HeJ f 62.28 21.871   18 5.155 0.3512 27.0, 112.0 0.39
C3H/HeJ m 60.22 29.249   18 6.8939 0.4857 12.0, 118.0 0.14
C57BL/6J f 36.222 24.023   18 5.6624 0.6632 6.0, 72.0 -0.72
C57BL/6J m 37.056 25.678   18 6.0523 0.693 2.0, 79.0 -0.79
CBA/J f 89.72 38.088   18 8.9774 0.4245 25.0, 136.0 1.55
CBA/J m 88.56 39.837   18 9.3896 0.4499 29.0, 156.0 1.26
DBA/2J f 66.28 28.58   18 6.7363 0.4312 23.0, 136.0 0.56
DBA/2J m 82.56 31.102   18 7.3308 0.3767 34.0, 127.0 1.02
FVB/NJ f 63.89 37.41   18 8.8176 0.5855 15.0, 132.0 0.45
FVB/NJ m 82.56 36.77   18 8.6668 0.4454 25.0, 141.0 1.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.8889 6.9323 25.5366 -1.7588
129S1/SvImJ m 23.1667 6.9323 36.8144 9.519
A/J f 40.4444 6.9323 54.0921 26.7968
A/J m 39.6111 6.9323 53.2588 25.9634
BALB/cByJ f 54.9444 6.9323 68.5921 41.2968
BALB/cByJ m 40.7222 6.9323 54.3699 27.0745
C3H/HeJ f 62.2778 6.9323 75.9255 48.6301
C3H/HeJ m 60.2222 6.9323 73.8699 46.5745
C57BL/6J f 36.2222 6.9323 49.8699 22.5745
C57BL/6J m 37.0556 6.9323 50.7032 23.4079
CBA/J f 89.7222 6.9323 103.3699 76.0745
CBA/J m 88.5556 6.9323 102.2032 74.9079
DBA/2J f 66.2778 6.9323 79.9255 52.6301
DBA/2J m 82.5556 6.9323 96.2032 68.9079
FVB/NJ f 63.8889 6.9323 77.5366 50.2412
FVB/NJ m 82.5556 6.9323 96.2032 68.9079


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 17.5278 4.9018 27.1782 7.8774
A/J both 40.0278 4.9018 49.6782 30.3774
BALB/cByJ both 47.8333 4.9018 57.4837 38.183
C3H/HeJ both 61.25 4.9018 70.9004 51.5996
C57BL/6J both 36.6389 4.9018 46.2893 26.9885
CBA/J both 89.1389 4.9018 98.7893 79.4885
DBA/2J both 74.4167 4.9018 84.067 64.7663
FVB/NJ both 73.2222 4.9018 82.8726 63.5718




  GWAS USING LINEAR MIXED MODELS