Project measure / variable:   Bolivar2   act_context_2

ID, description, units MPD:63907   act_context_2   activity (beam breaks) during 1 min period of contextual conditioning on day 2   [n]  2nd min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of contextual conditioning on day 2 2nd min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means50.85   n 52.85   n
Median of the strain means55.34   n 54.86   n
SD of the strain means± 21.695 ± 22.013
Coefficient of variation (CV)0.4266 0.4165
Min–max range of strain means14.444   –   88.11   n 18.111   –   79.89   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 288.0 288.0 0.3207 0.5717
strain 7 110777.4306 15825.3472 17.6195 < 0.0001
sex:strain 7 9584.0 1369.1429 1.5244 0.1589
Residuals 272 244302.4444 898.1708


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 14.444 10.382   18 2.4471 0.7188 -1.68
129S1/SvImJ m 18.111 12.107   18 2.8536 0.6685 3.0, 43.0 -1.58
A/J f 39.556 23.281   18 5.4875 0.5886 6.0, 76.0 -0.52
A/J m 49.389 27.479   18 6.4768 0.5564 6.0, 97.0 -0.16
BALB/cByJ f 59.28 34.296   18 8.0836 0.5786 5.0, 122.0 0.39
BALB/cByJ m 43.0 28.14   18 6.6328 0.6544 12.0, 112.0 -0.45
C3H/HeJ f 55.11 32.529   18 7.667 0.5902 14.0, 125.0 0.2
C3H/HeJ m 60.33 37.297   18 8.791 0.6182 10.0, 125.0 0.34
C57BL/6J f 34.778 21.567   18 5.0833 0.6201 -0.74
C57BL/6J m 29.278 17.029   18 4.0137 0.5816 4.0, 61.0 -1.07
CBA/J f 88.11 43.763   18 10.315 0.4967 16.0, 148.0 1.72
CBA/J m 76.11 34.318   18 8.0889 0.4509 8.0, 129.0 1.06
DBA/2J f 55.56 31.143   18 7.3406 0.5606 10.0, 107.0 0.22
DBA/2J m 66.72 28.388   18 6.691 0.4255 26.0, 112.0 0.63
FVB/NJ f 60.0 38.783   18 9.1412 0.6464 17.0, 136.0 0.42
FVB/NJ m 79.89 35.695   18 8.4133 0.4468 34.0, 157.0 1.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 14.4444 7.0639 28.3513 0.5376
129S1/SvImJ m 18.1111 7.0639 32.0179 4.2043
A/J f 39.5556 7.0639 53.4624 25.6487
A/J m 49.3889 7.0639 63.2957 35.4821
BALB/cByJ f 59.2778 7.0639 73.1846 45.371
BALB/cByJ m 43.0 7.0639 56.9068 29.0932
C3H/HeJ f 55.1111 7.0639 69.0179 41.2043
C3H/HeJ m 60.3333 7.0639 74.2402 46.4265
C57BL/6J f 34.7778 7.0639 48.6846 20.871
C57BL/6J m 29.2778 7.0639 43.1846 15.371
CBA/J f 88.1111 7.0639 102.0179 74.2043
CBA/J m 76.1111 7.0639 90.0179 62.2043
DBA/2J f 55.5556 7.0639 69.4624 41.6487
DBA/2J m 66.7222 7.0639 80.629 52.8154
FVB/NJ f 60.0 7.0639 73.9068 46.0932
FVB/NJ m 79.8889 7.0639 93.7957 65.9821


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.2778 4.9949 26.1114 6.4442
A/J both 44.4722 4.9949 54.3058 34.6386
BALB/cByJ both 51.1389 4.9949 60.9725 41.3053
C3H/HeJ both 57.7222 4.9949 67.5558 47.8886
C57BL/6J both 32.0278 4.9949 41.8614 22.1942
CBA/J both 82.1111 4.9949 91.9447 72.2775
DBA/2J both 61.1389 4.9949 70.9725 51.3053
FVB/NJ both 69.9444 4.9949 79.7781 60.1108




  GWAS USING LINEAR MIXED MODELS