Project measure / variable:   Bolivar2   act_context_1

ID, description, units MPD:63906   act_context_1   activity (beam breaks) during 1 min period of contextual conditioning on day 2   [n]  1st min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of contextual conditioning on day 2 1st min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means86.69   n 80.11   n
Median of the strain means81.12   n 80.91   n
SD of the strain means± 35.029 ± 31.489
Coefficient of variation (CV)0.4041 0.3931
Min–max range of strain means38.056   –   146.0   n 31.167   –   120.6   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3113.9201 3113.9201 2.2933 0.1311
strain 7 271337.941 38762.563 28.5477 < 0.0001
sex:strain 7 8310.6632 1187.2376 0.8744 0.5272
Residuals 272 369326.9444 1357.8196


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 38.056 10.091   18 2.3784 0.2652 21.0, 63.0 -1.39
129S1/SvImJ m 31.167 10.783   18 2.5415 0.346 10.0, 50.0 -1.55
A/J f 63.44 25.944   18 6.115 0.4089 14.0, 110.0 -0.66
A/J m 50.33 24.765   18 5.8371 0.492 4.0, 96.0 -0.95
BALB/cByJ f 146.0 47.149   18 11.113 0.3229 32.0, 203.0 1.69
BALB/cByJ m 120.6 53.23   18 12.547 0.4413 38.0, 228.0 1.29
C3H/HeJ f 82.06 37.389   18 8.8127 0.4557 12.0, 141.0 -0.13
C3H/HeJ m 86.72 38.012   18 8.9595 0.4383 20.0, 148.0 0.21
C57BL/6J f 58.89 30.416   18 7.1692 0.5165 20.0, 142.0 -0.79
C57BL/6J m 64.06 32.766   18 7.7229 0.5115 16.0, 137.0 -0.51
CBA/J f 111.5 44.793   18 10.558 0.4017 37.0, 191.0 0.71
CBA/J m 94.11 50.25   18 11.845 0.534 23.0, 172.0 0.44
DBA/2J f 80.17 36.51   18 8.6055 0.4554 23.0, 140.0 -0.19
DBA/2J m 75.11 30.978   18 7.3016 0.4124 28.0, 131.0 -0.16
FVB/NJ f 113.4 51.39   18 12.112 0.453 28.0, 207.0 0.76
FVB/NJ m 118.8 29.278   18 6.9009 0.2464 72.0, 174.0 1.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 38.0556 8.6853 55.1545 20.9566
129S1/SvImJ m 31.1667 8.6853 48.2656 14.0677
A/J f 63.4444 8.6853 80.5434 46.3455
A/J m 50.3333 8.6853 67.4323 33.2344
BALB/cByJ f 146.0 8.6853 163.099 128.901
BALB/cByJ m 120.6111 8.6853 137.7101 103.5122
C3H/HeJ f 82.0556 8.6853 99.1545 64.9566
C3H/HeJ m 86.7222 8.6853 103.8212 69.6233
C57BL/6J f 58.8889 8.6853 75.9878 41.7899
C57BL/6J m 64.0556 8.6853 81.1545 46.9566
CBA/J f 111.5 8.6853 128.599 94.401
CBA/J m 94.1111 8.6853 111.2101 77.0122
DBA/2J f 80.1667 8.6853 97.2656 63.0677
DBA/2J m 75.1111 8.6853 92.2101 58.0122
FVB/NJ f 113.4444 8.6853 130.5434 96.3455
FVB/NJ m 118.8333 8.6853 135.9323 101.7344


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 34.6111 6.1414 46.7019 22.5203
A/J both 56.8889 6.1414 68.9797 44.7981
BALB/cByJ both 133.3056 6.1414 145.3963 121.2148
C3H/HeJ both 84.3889 6.1414 96.4797 72.2981
C57BL/6J both 61.4722 6.1414 73.563 49.3814
CBA/J both 102.8056 6.1414 114.8963 90.7148
DBA/2J both 77.6389 6.1414 89.7297 65.5481
FVB/NJ both 116.1389 6.1414 128.2297 104.0481




  GWAS USING LINEAR MIXED MODELS