Project measure / variable:   Bolivar2   act_shock3_pct

ID, description, units MPD:63905   act_shock3_pct   percentage of baseline activity that occurred after third shock of training period   [%]  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - percentage of baseline activity that occurred after third shock of training period



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means30.048   % 35.706   %
Median of the strain means28.958   % 33.564   %
SD of the strain means± 9.3729 ± 13.87
Coefficient of variation (CV)0.3119 0.3884
Min–max range of strain means20.223   –   50.79   % 22.261   –   64.0   %
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2304.9787 2304.9787 7.6102 0.0062
strain 7 18324.2019 2617.7431 8.6428 < 0.0001
sex:strain 7 16987.6887 2426.8127 8.0124 < 0.0001
Residuals 272 82383.7637 302.8815


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 20.223 9.3716   18 2.2089 0.4634 7.03, 44.85 -1.05
129S1/SvImJ m 22.261 14.038   18 3.3089 0.6306 9.69, 62.02 -0.97
A/J f 50.79 36.324   18 8.5617 0.7151 10.93, 157.53 2.21
A/J m 41.294 20.173   18 4.7549 0.4885 10.06, 79.21 0.4
BALB/cByJ f 26.214 7.5507   18 1.7797 0.288 14.52, 46.14 -0.41
BALB/cByJ m 24.456 12.352   18 2.9115 0.5051 9.11, 50.75 -0.81
C3H/HeJ f 29.297 11.065   18 2.608 0.3777 10.63, 49.67 -0.08
C3H/HeJ m 42.363 16.472   18 3.8824 0.3888 17.72, 79.93 0.48
C57BL/6J f 28.619 10.599   18 2.4982 0.3703 12.63, 49.25 -0.15
C57BL/6J m 30.365 11.211   18 2.6424 0.3692 12.43, 52.75 -0.39
CBA/J f 32.843 14.066   18 3.3155 0.4283 13.43, 63.39 0.3
CBA/J m 24.149 8.1115   18 1.9119 0.3359 12.79, 39.95 -0.83
DBA/2J f 22.109 12.514   18 2.9496 0.566 6.12, 55.15 -0.85
DBA/2J m 64.0 33.717   18 7.9472 0.5268 13.51, 106.14 2.04
FVB/NJ f 30.289 12.36   18 2.9133 0.4081 11.16, 61.2 0.03
FVB/NJ m 36.763 16.839   18 3.9689 0.458 18.75, 79.41 0.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 20.2228 4.102 28.2986 12.147
129S1/SvImJ m 22.2611 4.102 30.3369 14.1853
A/J f 50.7928 4.102 58.8686 42.717
A/J m 41.2944 4.102 49.3702 33.2187
BALB/cByJ f 26.2139 4.102 34.2897 18.1381
BALB/cByJ m 24.4561 4.102 32.5319 16.3803
C3H/HeJ f 29.2972 4.102 37.373 21.2214
C3H/HeJ m 42.3628 4.102 50.4386 34.287
C57BL/6J f 28.6189 4.102 36.6947 20.5431
C57BL/6J m 30.365 4.102 38.4408 22.2892
CBA/J f 32.8433 4.102 40.9191 24.7675
CBA/J m 24.1489 4.102 32.2247 16.0731
DBA/2J f 22.1094 4.102 30.1852 14.0337
DBA/2J m 64.0011 4.102 72.0769 55.9253
FVB/NJ f 30.2894 4.102 38.3652 22.2137
FVB/NJ m 36.7628 4.102 44.8386 28.687


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 21.2419 2.9006 26.9524 15.5315
A/J both 46.0436 2.9006 51.7541 40.3332
BALB/cByJ both 25.335 2.9006 31.0454 19.6246
C3H/HeJ both 35.83 2.9006 41.5404 30.1196
C57BL/6J both 29.4919 2.9006 35.2024 23.7815
CBA/J both 28.4961 2.9006 34.2066 22.7857
DBA/2J both 43.0553 2.9006 48.7657 37.3448
FVB/NJ both 33.5261 2.9006 39.2366 27.8157




  GWAS USING LINEAR MIXED MODELS