Project measure / variable:   Bolivar1   RR_time_pct_d2

ID, description, units MPD:63462   RR_time_pct_d2   percentage of time spent in right-rear of arena, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in right-rear of arena, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means13.243   % 12.261   %
Median of the strain means12.233   % 12.057   %
SD of the strain means± 4.373 ± 4.4711
Coefficient of variation (CV)0.3302 0.3647
Min–max range of strain means6.5083   –   23.208   % 7.2472   –   21.833   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 57.8202 57.8202 0.4703 0.4936
strain 9 3141.2491 349.0277 2.8388 0.0035
sex:strain 9 1083.2013 120.3557 0.9789 0.4583
Residuals 220 27048.5819 122.9481


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.5083 2.9482   12 0.85107 0.453 -1.54
129S1/SvImJ m 12.939 11.813   12 3.4102 0.913 0.15
A/J f 16.478 16.316   12 4.7101 0.9902 3.1, 62.76666667 0.74
A/J m 21.833 15.814   12 4.5652 0.7243 1.866666667, 50.1 2.14
B6129SF1/J f 23.208 24.338   12 7.0257 1.0487 6.1, 79.83333333 2.28
B6129SF1/J m 16.278 17.409   12 5.0255 1.0695 5.4, 63.13333333 0.9
B6C3F1/J f 10.914 3.1007   12 0.89511 0.2841 5.533333333, 15.66666667 -0.53
B6C3F1/J m 10.442 4.2437   12 1.225 0.4064 5.433333333, 20.66666667 -0.41
BALB/cByJ f 11.425 12.267   12 3.541 1.0737 -0.42
BALB/cByJ m 8.2167 2.5873   12 0.7469 0.3149 3.9, 12.73333333 -0.9
C3H/HeJ f 11.342 8.1015   12 2.3387 0.7143 5.6, 30.83333333 -0.43
C3H/HeJ m 12.853 8.2574   12 2.3837 0.6425 5.333333333, 31.86666667 0.13
C57BL/6J f 13.414 6.8053   12 1.9645 0.5073 3.3, 24.4 0.04
C57BL/6J m 14.019 10.918   12 3.1518 0.7788 6.7, 45.76666667 0.39
CBA/J f 12.747 8.7022   12 2.5121 0.6827 -0.11
CBA/J m 7.5222 3.9492   12 1.14 0.525 2.366666667, 17.83333333 -1.06
DBA/2J f 11.719 7.8574   12 2.2682 0.6705 5.933333333, 32.33333333 -0.35
DBA/2J m 7.2472 4.7166   12 1.3616 0.6508 -1.12
FVB/NJ f 14.672 14.994   12 4.3285 1.022 4.366666667, 50.96666667 0.33
FVB/NJ m 11.261 3.8389   12 1.1082 0.3409 5.566666667, 19.73333333 -0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.5083 3.2009 12.8167 0.2
129S1/SvImJ m 12.9389 3.2009 19.2472 6.6306
A/J f 16.4778 3.2009 22.7861 10.1695
A/J m 21.8333 3.2009 28.1417 15.525
B6129SF1/J f 23.2083 3.2009 29.5167 16.9
B6129SF1/J m 16.2778 3.2009 22.5861 9.9695
B6C3F1/J f 10.9139 3.2009 17.2222 4.6056
B6C3F1/J m 10.4417 3.2009 16.75 4.1333
BALB/cByJ f 11.425 3.2009 17.7333 5.1167
BALB/cByJ m 8.2167 3.2009 14.525 1.9083
C3H/HeJ f 11.3417 3.2009 17.65 5.0333
C3H/HeJ m 12.8528 3.2009 19.1611 6.5445
C57BL/6J f 13.4139 3.2009 19.7222 7.1056
C57BL/6J m 14.0194 3.2009 20.3278 7.7111
CBA/J f 12.7472 3.2009 19.0555 6.4389
CBA/J m 7.5222 3.2009 13.8305 1.2139
DBA/2J f 11.7194 3.2009 18.0278 5.4111
DBA/2J m 7.2472 3.2009 13.5555 0.9389
FVB/NJ f 14.6722 3.2009 20.9805 8.3639
FVB/NJ m 11.2611 3.2009 17.5694 4.9528


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.7236 2.2634 14.1843 5.263
A/J both 19.1556 2.2634 23.6162 14.6949
B6129SF1/J both 19.7431 2.2634 24.2037 15.2824
B6C3F1/J both 10.6778 2.2634 15.1384 6.2171
BALB/cByJ both 9.8208 2.2634 14.2815 5.3602
C3H/HeJ both 12.0972 2.2634 16.5579 7.6366
C57BL/6J both 13.7167 2.2634 18.1773 9.256
CBA/J both 10.1347 2.2634 14.5954 5.6741
DBA/2J both 9.4833 2.2634 13.944 5.0227
FVB/NJ both 12.9667 2.2634 17.4273 8.506




  GWAS USING LINEAR MIXED MODELS