Project measure / variable:   Bolivar1   RR_time_pct_d1

ID, description, units MPD:63461   RR_time_pct_d1   percentage of time spent in right-rear of arena, 5 min test in dark   [%]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in right-rear of arena, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means10.687   % 9.8192   %
Median of the strain means10.544   % 9.7195   %
SD of the strain means± 2.2615 ± 2.0121
Coefficient of variation (CV)0.2116 0.2049
Min–max range of strain means7.3194   –   15.114   % 7.5583   –   14.881   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 45.1534 45.1534 0.6627 0.4165
strain 9 180.6861 20.0762 0.2946 0.9757
sex:strain 9 808.8173 89.8686 1.3189 0.2281
Residuals 220 14990.139 68.137


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 12.953 16.923   12 4.8853 1.3065 1.0
129S1/SvImJ m 7.5583 5.9833   12 1.7272 0.7916 -1.12
A/J f 8.3333 5.2321   12 1.5104 0.6279 -1.04
A/J m 14.881 16.713   12 4.8246 1.1231 2.52
B6129SF1/J f 11.436 12.306   12 3.5524 1.0761 5.133333333, 49.8 0.33
B6129SF1/J m 10.111 3.8717   12 1.1177 0.3829 4.933333333, 17.0 0.15
B6C3F1/J f 11.403 5.202   12 1.5017 0.4562 4.633333333, 24.0 0.32
B6C3F1/J m 9.6667 3.4231   12 0.98817 0.3541 6.2, 16.93333333 -0.08
BALB/cByJ f 15.114 11.136   12 3.2147 0.7368 6.533333333, 40.3 1.96
BALB/cByJ m 7.5861 3.4599   12 0.99878 0.4561 3.633333333, 15.86666667 -1.11
C3H/HeJ f 11.239 3.2686   12 0.94358 0.2908 5.6, 19.03333333 0.24
C3H/HeJ m 9.2194 3.3272   12 0.96049 0.3609 3.9, 17.33333333 -0.3
C57BL/6J f 7.3194 1.6522   12 0.47695 0.2257 5.0, 10.4 -1.49
C57BL/6J m 9.4333 2.6375   12 0.76137 0.2796 4.9, 13.53333333 -0.19
CBA/J f 9.85 4.7951   12 1.3842 0.4868 -0.37
CBA/J m 9.8361 5.2294   12 1.5096 0.5317 3.533333333, 20.33333333 0.01
DBA/2J f 9.5167 4.6935   12 1.3549 0.4932 -0.52
DBA/2J m 10.128 16.184   12 4.672 1.598 0.15
FVB/NJ f 9.7028 4.1186   12 1.1889 0.4245 3.4, 15.56666667 -0.44
FVB/NJ m 9.7722 3.1561   12 0.9111 0.323 4.533333333, 15.23333333 -0.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 12.9528 2.3829 17.649 8.2566
129S1/SvImJ m 7.5583 2.3829 12.2545 2.8622
A/J f 8.3333 2.3829 13.0295 3.6372
A/J m 14.8806 2.3829 19.5767 10.1844
B6129SF1/J f 11.4361 2.3829 16.1323 6.7399
B6129SF1/J m 10.1111 2.3829 14.8073 5.4149
B6C3F1/J f 11.4028 2.3829 16.099 6.7066
B6C3F1/J m 9.6667 2.3829 14.3628 4.9705
BALB/cByJ f 15.1139 2.3829 19.8101 10.4177
BALB/cByJ m 7.5861 2.3829 12.2823 2.8899
C3H/HeJ f 11.2389 2.3829 15.9351 6.5427
C3H/HeJ m 9.2194 2.3829 13.9156 4.5233
C57BL/6J f 7.3194 2.3829 12.0156 2.6233
C57BL/6J m 9.4333 2.3829 14.1295 4.7372
CBA/J f 9.85 2.3829 14.5462 5.1538
CBA/J m 9.8361 2.3829 14.5323 5.1399
DBA/2J f 9.5167 2.3829 14.2128 4.8205
DBA/2J m 10.1278 2.3829 14.824 5.4316
FVB/NJ f 9.7028 2.3829 14.399 5.0066
FVB/NJ m 9.7722 2.3829 14.4684 5.076


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.2556 1.6849 13.5763 6.9349
A/J both 11.6069 1.6849 14.9276 8.2862
B6129SF1/J both 10.7736 1.6849 14.0943 7.4529
B6C3F1/J both 10.5347 1.6849 13.8554 7.214
BALB/cByJ both 11.35 1.6849 14.6707 8.0293
C3H/HeJ both 10.2292 1.6849 13.5499 6.9085
C57BL/6J both 8.3764 1.6849 11.6971 5.0557
CBA/J both 9.8431 1.6849 13.1638 6.5224
DBA/2J both 9.8222 1.6849 13.1429 6.5015
FVB/NJ both 9.7375 1.6849 13.0582 6.4168




  GWAS USING LINEAR MIXED MODELS