Project measure / variable:   Bolivar1   LR_time_pct_d2

ID, description, units MPD:63459   LR_time_pct_d2   percentage of time spent in left-rear of arena, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in left-rear of arena, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means11.052   % 9.085   %
Median of the strain means10.786   % 9.2069   %
SD of the strain means± 1.7237 ± 2.6214
Coefficient of variation (CV)0.156 0.2885
Min–max range of strain means8.3306   –   13.861   % 5.0111   –   12.386   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 232.2634 232.2634 3.2412 0.0732
strain 9 537.2929 59.6992 0.8331 0.5863
sex:strain 9 525.703 58.4114 0.8151 0.6028
Residuals 220 15765.2942 71.6604


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 12.494 6.6214   12 1.9114 0.5299 3.966666667, 28.46666667 0.84
129S1/SvImJ m 6.5083 9.706   12 2.8019 1.4913 -0.98
A/J f 13.325 12.983   12 3.7478 0.9743 1.32
A/J m 11.956 10.714   12 3.0929 0.8962 1.1
B6129SF1/J f 10.794 6.1298   12 1.7695 0.5679 2.166666667, 23.46666667 -0.15
B6129SF1/J m 8.8028 2.4094   12 0.69553 0.2737 4.7, 13.0 -0.11
B6C3F1/J f 10.814 5.3272   12 1.5378 0.4926 5.5, 26.0 -0.14
B6C3F1/J m 12.386 10.203   12 2.9454 0.8238 4.5, 41.93333333 1.26
BALB/cByJ f 10.144 4.0853   12 1.1793 0.4027 2.533333333, 16.86666667 -0.53
BALB/cByJ m 5.9444 2.3269   12 0.67173 0.3914 2.333333333, 10.23333333 -1.2
C3H/HeJ f 8.3306 3.2747   12 0.94532 0.3931 4.066666667, 13.63333333 -1.58
C3H/HeJ m 9.7889 4.4975   12 1.2983 0.4594 5.6, 21.26666667 0.27
C57BL/6J f 10.672 5.9913   12 1.7295 0.5614 4.5, 21.13333333 -0.22
C57BL/6J m 8.8361 5.4671   12 1.5782 0.6187 3.3, 24.7 -0.09
CBA/J f 10.778 12.49   12 3.6056 1.1589 2.866666667, 49.13333333 -0.16
CBA/J m 5.0111 3.1957   12 0.92251 0.6377 2.633333333, 14.23333333 -1.55
DBA/2J f 9.3111 3.5179   12 1.0155 0.3778 2.333333333, 14.13333333 -1.01
DBA/2J m 12.039 15.967   12 4.6092 1.3263 1.13
FVB/NJ f 13.861 16.358   12 4.722 1.1801 3.0, 58.7 1.63
FVB/NJ m 9.5778 4.0005   12 1.1548 0.4177 3.066666667, 17.9 0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 12.4944 2.4437 17.3105 7.6784
129S1/SvImJ m 6.5083 2.4437 11.3244 1.6923
A/J f 13.325 2.4437 18.1411 8.5089
A/J m 11.9556 2.4437 16.7716 7.1395
B6129SF1/J f 10.7944 2.4437 15.6105 5.9784
B6129SF1/J m 8.8028 2.4437 13.6188 3.9867
B6C3F1/J f 10.8139 2.4437 15.63 5.9978
B6C3F1/J m 12.3861 2.4437 17.2022 7.57
BALB/cByJ f 10.1444 2.4437 14.9605 5.3284
BALB/cByJ m 5.9444 2.4437 10.7605 1.1284
C3H/HeJ f 8.3306 2.4437 13.1466 3.5145
C3H/HeJ m 9.7889 2.4437 14.605 4.9728
C57BL/6J f 10.6722 2.4437 15.4883 5.8562
C57BL/6J m 8.8361 2.4437 13.6522 4.02
CBA/J f 10.7778 2.4437 15.5938 5.9617
CBA/J m 5.0111 2.4437 9.8272 0.195
DBA/2J f 9.3111 2.4437 14.1272 4.495
DBA/2J m 12.0389 2.4437 16.855 7.2228
FVB/NJ f 13.8611 2.4437 18.6772 9.045
FVB/NJ m 9.5778 2.4437 14.3938 4.7617


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.5014 1.728 12.9069 6.0959
A/J both 12.6403 1.728 16.0458 9.2348
B6129SF1/J both 9.7986 1.728 13.2041 6.3931
B6C3F1/J both 11.6 1.728 15.0055 8.1945
BALB/cByJ both 8.0444 1.728 11.4499 4.639
C3H/HeJ both 9.0597 1.728 12.4652 5.6542
C57BL/6J both 9.7542 1.728 13.1596 6.3487
CBA/J both 7.8944 1.728 11.2999 4.489
DBA/2J both 10.675 1.728 14.0805 7.2695
FVB/NJ both 11.7194 1.728 15.1249 8.314




  GWAS USING LINEAR MIXED MODELS