Project measure / variable:   Bolivar1   RF_time_pct_d3

ID, description, units MPD:63457   RF_time_pct_d3   percentage of time spent in right-front of arena, 5 min test in dark   [%]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in right-front of arena, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means20.845   % 15.363   %
Median of the strain means19.397   % 12.307   %
SD of the strain means± 7.5122 ± 7.2852
Coefficient of variation (CV)0.3604 0.4742
Min–max range of strain means15.411   –   41.356   % 7.7639   –   30.072   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1803.1029 1803.1029 6.0549 0.0146
strain 9 4781.0946 531.2327 1.7839 0.0725
sex:strain 9 7045.5271 782.8363 2.6288 0.0066
Residuals 220 65514.0766 297.7913


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 21.269 24.497   12 7.0718 1.1518 1.6, 90.0 0.06
129S1/SvImJ m 23.236 19.042   12 5.4971 0.8195 1.08
A/J f 15.411 10.746   12 3.1022 0.6973 4.533333333, 39.6 -0.72
A/J m 18.353 15.878   12 4.5835 0.8651 0.41
B6129SF1/J f 41.356 30.864   12 8.9097 0.7463 4.066666667, 82.73333333 2.73
B6129SF1/J m 11.636 4.5783   12 1.3216 0.3935 5.933333333, 21.16666667 -0.51
B6C3F1/J f 16.378 9.1991   12 2.6556 0.5617 5.2, 32.9 -0.59
B6C3F1/J m 9.95 2.9742   12 0.85858 0.2989 4.733333333, 14.7 -0.74
BALB/cByJ f 19.844 26.665   12 7.6976 1.3437 3.233333333, 73.9 -0.13
BALB/cByJ m 12.978 15.274   12 4.4092 1.1769 5.0, 59.46666667 -0.33
C3H/HeJ f 19.761 16.186   12 4.6724 0.8191 5.933333333, 60.13333333 -0.14
C3H/HeJ m 10.322 4.678   12 1.3504 0.4532 6.9, 24.26666667 -0.69
C57BL/6J f 15.917 12.768   12 3.6858 0.8022 5.033333333, 46.16666667 -0.66
C57BL/6J m 20.017 15.176   12 4.3809 0.7582 5.433333333, 50.6 0.64
CBA/J f 21.378 20.043   12 5.786 0.9376 0.07
CBA/J m 7.7639 3.0974   12 0.89413 0.3989 2.3, 13.73333333 -1.04
DBA/2J f 19.033 16.107   12 4.6497 0.8463 5.7, 62.46666667 -0.24
DBA/2J m 30.072 26.843   12 7.749 0.8926 0.233333333, 90.33333333 2.02
FVB/NJ f 18.106 23.204   12 6.6983 1.2816 4.033333333, 82.4 -0.36
FVB/NJ m 9.3056 2.6942   12 0.77774 0.2895 6.533333333, 14.93333333 -0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 21.2694 4.9816 31.0871 11.4518
129S1/SvImJ m 23.2361 4.9816 33.0538 13.4184
A/J f 15.4111 4.9816 25.2288 5.5934
A/J m 18.3528 4.9816 28.1705 8.5351
B6129SF1/J f 41.3556 4.9816 51.1732 31.5379
B6129SF1/J m 11.6361 4.9816 21.4538 1.8184
B6C3F1/J f 16.3778 4.9816 26.1955 6.5601
B6C3F1/J m 9.95 4.9816 19.7677 0.1323
BALB/cByJ f 19.8444 4.9816 29.6621 10.0268
BALB/cByJ m 12.9778 4.9816 22.7955 3.1601
C3H/HeJ f 19.7611 4.9816 29.5788 9.9434
C3H/HeJ m 10.3222 4.9816 20.1399 0.5045
C57BL/6J f 15.9167 4.9816 25.7344 6.099
C57BL/6J m 20.0167 4.9816 29.8344 10.199
CBA/J f 21.3778 4.9816 31.1955 11.5601
CBA/J m 7.7639 4.9816 17.5816 -2.0538
DBA/2J f 19.0333 4.9816 28.851 9.2156
DBA/2J m 30.0722 4.9816 39.8899 20.2545
FVB/NJ f 18.1056 4.9816 27.9232 8.2879
FVB/NJ m 9.3056 4.9816 19.1232 -0.5121


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 22.2528 3.5225 29.1949 15.3106
A/J both 16.8819 3.5225 23.8241 9.9398
B6129SF1/J both 26.4958 3.5225 33.438 19.5537
B6C3F1/J both 13.1639 3.5225 20.106 6.2217
BALB/cByJ both 16.4111 3.5225 23.3533 9.469
C3H/HeJ both 15.0417 3.5225 21.9838 8.0995
C57BL/6J both 17.9667 3.5225 24.9088 11.0245
CBA/J both 14.5708 3.5225 21.513 7.6287
DBA/2J both 24.5528 3.5225 31.4949 17.6106
FVB/NJ both 13.7056 3.5225 20.6477 6.7634




  GWAS USING LINEAR MIXED MODELS