Project measure / variable:   Bolivar1   RF_time_pct_d2

ID, description, units MPD:63456   RF_time_pct_d2   percentage of time spent in right-front of arena, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in right-front of arena, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means14.12   % 13.817   %
Median of the strain means14.226   % 11.942   %
SD of the strain means± 2.9026 ± 5.7997
Coefficient of variation (CV)0.2056 0.4198
Min–max range of strain means9.6056   –   19.778   % 7.4056   –   23.967   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.5308 5.5308 0.0276 0.8683
strain 9 1521.4372 169.0486 0.8424 0.5778
sex:strain 9 3021.152 335.6836 1.6728 0.0968
Residuals 220 44149.0758 200.6776


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.911 7.6899   12 2.2199 0.7048 -1.11
129S1/SvImJ m 21.297 25.585   12 7.3857 1.2013 0.933333333, 91.0 1.29
A/J f 12.275 11.517   12 3.3246 0.9382 -0.64
A/J m 16.944 22.186   12 6.4046 1.3093 0.54
B6129SF1/J f 16.806 17.208   12 4.9675 1.0239 3.566666667, 54.36666667 0.93
B6129SF1/J m 11.167 6.0011   12 1.7324 0.5374 5.766666667, 27.13333333 -0.46
B6C3F1/J f 9.6056 2.7107   12 0.7825 0.2822 5.666666667, 14.23333333 -1.56
B6C3F1/J m 12.717 8.1882   12 2.3637 0.6439 5.166666667, 34.4 -0.19
BALB/cByJ f 14.183 17.445   12 5.0359 1.23 0.02
BALB/cByJ m 7.6389 4.8348   12 1.3957 0.6329 4.0, 22.3 -1.07
C3H/HeJ f 14.639 9.5384   12 2.7535 0.6516 4.066666667, 35.16666667 0.18
C3H/HeJ m 9.0083 2.2937   12 0.66213 0.2546 3.8, 12.0 -0.83
C57BL/6J f 15.392 14.786   12 4.2685 0.9607 2.666666667, 54.1 0.44
C57BL/6J m 17.422 12.923   12 3.7305 0.7418 4.466666667, 48.56666667 0.62
CBA/J f 19.778 14.897   12 4.3005 0.7532 1.95
CBA/J m 7.4056 3.9671   12 1.1452 0.5357 2.0, 13.26666667 -1.11
DBA/2J f 14.269 8.4318   12 2.4341 0.5909 6.133333333, 33.0 0.05
DBA/2J m 23.967 25.862   12 7.4658 1.0791 4.333333333, 94.23333333 1.75
FVB/NJ f 13.344 19.61   12 5.661 1.4695 4.833333333, 75.26666667 -0.27
FVB/NJ m 10.6 9.8335   12 2.8387 0.9277 5.133333333, 40.8 -0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.9111 4.0894 18.9705 2.8517
129S1/SvImJ m 21.2972 4.0894 29.3566 13.2378
A/J f 12.275 4.0894 20.3344 4.2156
A/J m 16.9444 4.0894 25.0038 8.885
B6129SF1/J f 16.8056 4.0894 24.865 8.7462
B6129SF1/J m 11.1667 4.0894 19.2261 3.1073
B6C3F1/J f 9.6056 4.0894 17.665 1.5462
B6C3F1/J m 12.7167 4.0894 20.7761 4.6573
BALB/cByJ f 14.1833 4.0894 22.2427 6.1239
BALB/cByJ m 7.6389 4.0894 15.6983 -0.4205
C3H/HeJ f 14.6389 4.0894 22.6983 6.5795
C3H/HeJ m 9.0083 4.0894 17.0677 0.9489
C57BL/6J f 15.3917 4.0894 23.4511 7.3323
C57BL/6J m 17.4222 4.0894 25.4816 9.3628
CBA/J f 19.7778 4.0894 27.8372 11.7184
CBA/J m 7.4056 4.0894 15.465 -0.6538
DBA/2J f 14.2694 4.0894 22.3288 6.21
DBA/2J m 23.9667 4.0894 32.0261 15.9073
FVB/NJ f 13.3444 4.0894 21.4038 5.285
FVB/NJ m 10.6 4.0894 18.6594 2.5406


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.1042 2.8916 21.803 10.4053
A/J both 14.6097 2.8916 20.3086 8.9109
B6129SF1/J both 13.9861 2.8916 19.685 8.2873
B6C3F1/J both 11.1611 2.8916 16.86 5.4623
BALB/cByJ both 10.9111 2.8916 16.61 5.2123
C3H/HeJ both 11.8236 2.8916 17.5225 6.1248
C57BL/6J both 16.4069 2.8916 22.1058 10.7081
CBA/J both 13.5917 2.8916 19.2905 7.8928
DBA/2J both 19.1181 2.8916 24.8169 13.4192
FVB/NJ both 11.9722 2.8916 17.6711 6.2734




  GWAS USING LINEAR MIXED MODELS