Project measure / variable:   Bolivar1   LF_time_pct_d1

ID, description, units MPD:63452   LF_time_pct_d1   percentage of time spent in left-front of arena, 5 min test in dark   [%]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in left-front of arena, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means12.504   % 10.952   %
Median of the strain means11.246   % 10.486   %
SD of the strain means± 3.5077 ± 3.2583
Coefficient of variation (CV)0.2805 0.2975
Min–max range of strain means10.194   –   21.881   % 6.8056   –   18.586   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 144.4602 144.4602 1.5072 0.2209
strain 9 774.8716 86.0968 0.8983 0.5276
sex:strain 9 1700.4084 188.9343 1.9712 0.0438
Residuals 220 21086.7569 95.8489


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.625 8.2499   12 2.3815 0.7765 -0.54
129S1/SvImJ m 18.586 26.639   12 7.6901 1.4333 2.34
A/J f 21.881 24.949   12 7.2021 1.1402 2.67
A/J m 8.775 9.5148   12 2.7467 1.0843 -0.67
B6129SF1/J f 10.683 5.9245   12 1.7102 0.5546 6.066666667, 28.06666667 -0.52
B6129SF1/J m 12.403 3.4797   12 1.0045 0.2806 6.966666667, 17.46666667 0.45
B6C3F1/J f 11.192 3.1067   12 0.89683 0.2776 6.5, 16.26666667 -0.37
B6C3F1/J m 12.256 4.059   12 1.1717 0.3312 5.9, 16.96666667 0.4
BALB/cByJ f 10.194 7.0668   12 2.04 0.6932 -0.66
BALB/cByJ m 7.7722 2.1067   12 0.60815 0.2711 5.433333333, 12.23333333 -0.98
C3H/HeJ f 12.175 3.9789   12 1.1486 0.3268 6.966666667, 19.93333333 -0.09
C3H/HeJ m 10.567 3.5692   12 1.0303 0.3378 5.433333333, 17.83333333 -0.12
C57BL/6J f 11.3 7.5265   12 2.1727 0.6661 5.433333333, 30.8 -0.34
C57BL/6J m 11.672 2.8608   12 0.82583 0.2451 6.333333333, 17.2 0.22
CBA/J f 14.336 8.2907   12 2.3933 0.5783 7.033333333, 37.03333333 0.52
CBA/J m 6.8056 2.147   12 0.61978 0.3155 3.033333333, 10.4 -1.27
DBA/2J f 12.103 3.3266   12 0.96031 0.2749 7.1, 17.46666667 -0.11
DBA/2J m 10.406 9.2334   12 2.6655 0.8874 -0.17
FVB/NJ f 10.547 5.6403   12 1.6282 0.5348 2.433333333, 19.33333333 -0.56
FVB/NJ m 10.278 1.9225   12 0.55496 0.187 8.1, 14.26666667 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.625 2.8262 16.1949 5.0551
129S1/SvImJ m 18.5861 2.8262 24.156 13.0162
A/J f 21.8806 2.8262 27.4504 16.3107
A/J m 8.775 2.8262 14.3449 3.2051
B6129SF1/J f 10.6833 2.8262 16.2532 5.1134
B6129SF1/J m 12.4028 2.8262 17.9727 6.8329
B6C3F1/J f 11.1917 2.8262 16.7616 5.6218
B6C3F1/J m 12.2556 2.8262 17.8254 6.6857
BALB/cByJ f 10.1944 2.8262 15.7643 4.6246
BALB/cByJ m 7.7722 2.8262 13.3421 2.2023
C3H/HeJ f 12.175 2.8262 17.7449 6.6051
C3H/HeJ m 10.5667 2.8262 16.1366 4.9968
C57BL/6J f 11.3 2.8262 16.8699 5.7301
C57BL/6J m 11.6722 2.8262 17.2421 6.1023
CBA/J f 14.3361 2.8262 19.906 8.7662
CBA/J m 6.8056 2.8262 12.3754 1.2357
DBA/2J f 12.1028 2.8262 17.6727 6.5329
DBA/2J m 10.4056 2.8262 15.9754 4.8357
FVB/NJ f 10.5472 2.8262 16.1171 4.9773
FVB/NJ m 10.2778 2.8262 15.8477 4.7079


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 14.6056 1.9984 18.5441 10.667
A/J both 15.3278 1.9984 19.2663 11.3893
B6129SF1/J both 11.5431 1.9984 15.4816 7.6045
B6C3F1/J both 11.7236 1.9984 15.6621 7.7851
BALB/cByJ both 8.9833 1.9984 12.9218 5.0448
C3H/HeJ both 11.3708 1.9984 15.3093 7.4323
C57BL/6J both 11.4861 1.9984 15.4246 7.5476
CBA/J both 10.5708 1.9984 14.5093 6.6323
DBA/2J both 11.2542 1.9984 15.1927 7.3157
FVB/NJ both 10.4125 1.9984 14.351 6.474




  GWAS USING LINEAR MIXED MODELS