Project measure / variable:   Bolivar1   center_dist_d3

ID, description, units MPD:63448   center_dist_d3   distance traveled in center, 5 min test in dark   [cm]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - distance traveled in center, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means138.1   cm 210.9   cm
Median of the strain means132.8   cm 228.6   cm
SD of the strain means± 58.87 ± 141.8
Coefficient of variation (CV)0.4264 0.6725
Min–max range of strain means60.58   –   227.7   cm 27.667   –   519.9   cm
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 318208.8375 318208.8375 15.7896 0.0001
strain 9 1264860.5375 140540.0597 6.9736 < 0.0001
sex:strain 9 1281723.2042 142413.6894 7.0666 < 0.0001
Residuals 220 4433669.0833 20153.0413


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 119.7 114.1   12 32.936 0.9534 -0.31
129S1/SvImJ m 28.833 58.19   12 16.798 2.0181 -1.28
A/J f 60.58 87.54   12 25.272 1.445 -1.32
A/J m 138.8 186.7   12 53.89 1.3454 -0.51
B6129SF1/J f 63.92 95.23   12 27.491 1.4899 -1.26
B6129SF1/J m 236.3 165.1   12 47.653 0.6985 3.0, 600.0 0.18
B6C3F1/J f 185.7 130.3   12 37.61 0.7017 5.0, 401.0 0.81
B6C3F1/J m 220.9 171.1   12 49.386 0.7744 0.07
BALB/cByJ f 227.7 185.5   12 53.55 0.8148 10.0, 495.0 1.52
BALB/cByJ m 271.8 206.8   12 59.69 0.7609 28.0, 647.0 0.43
C3H/HeJ f 109.2 82.89   12 23.928 0.7593 3.0, 333.0 -0.49
C3H/HeJ m 272.1 97.79   12 28.23 0.3594 59.0, 389.0 0.43
C57BL/6J f 145.8 102.6   12 29.604 0.7032 66.0, 404.0 0.13
C57BL/6J m 146.3 102.6   12 29.612 0.701 5.0, 330.0 -0.46
CBA/J f 97.67 176.6   12 50.97 1.8077 -0.69
CBA/J m 246.2 109.1   12 31.495 0.4432 90.0, 444.0 0.25
DBA/2J f 217.5 162.6   12 46.926 0.7474 1.35
DBA/2J m 27.667 80.12   12 23.128 2.8958 -1.29
FVB/NJ f 152.8 139.0   12 40.113 0.9092 3.0, 371.0 0.25
FVB/NJ m 519.9 227.4   12 65.65 0.4374 119.0, 880.0 2.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 119.6667 40.9807 200.4317 38.9016
129S1/SvImJ m 28.8333 40.9807 109.5984 -51.9317
A/J f 60.5833 40.9807 141.3484 -20.1817
A/J m 138.75 40.9807 219.515 57.985
B6129SF1/J f 63.9167 40.9807 144.6817 -16.8484
B6129SF1/J m 236.3333 40.9807 317.0984 155.5683
B6C3F1/J f 185.6667 40.9807 266.4317 104.9016
B6C3F1/J m 220.9167 40.9807 301.6817 140.1516
BALB/cByJ f 227.6667 40.9807 308.4317 146.9016
BALB/cByJ m 271.75 40.9807 352.515 190.985
C3H/HeJ f 109.1667 40.9807 189.9317 28.4016
C3H/HeJ m 272.0833 40.9807 352.8484 191.3183
C57BL/6J f 145.8333 40.9807 226.5984 65.0683
C57BL/6J m 146.3333 40.9807 227.0984 65.5683
CBA/J f 97.6667 40.9807 178.4317 16.9016
CBA/J m 246.1667 40.9807 326.9317 165.4016
DBA/2J f 217.5 40.9807 298.265 136.735
DBA/2J m 27.6667 40.9807 108.4317 -53.0984
FVB/NJ f 152.8333 40.9807 233.5984 72.0683
FVB/NJ m 519.9167 40.9807 600.6817 439.1516


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 74.25 28.9778 131.3595 17.1405
A/J both 99.6667 28.9778 156.7762 42.5572
B6129SF1/J both 150.125 28.9778 207.2345 93.0155
B6C3F1/J both 203.2917 28.9778 260.4012 146.1822
BALB/cByJ both 249.7083 28.9778 306.8178 192.5988
C3H/HeJ both 190.625 28.9778 247.7345 133.5155
C57BL/6J both 146.0833 28.9778 203.1928 88.9738
CBA/J both 171.9167 28.9778 229.0262 114.8072
DBA/2J both 122.5833 28.9778 179.6928 65.4738
FVB/NJ both 336.375 28.9778 393.4845 279.2655




  GWAS USING LINEAR MIXED MODELS