Project measure / variable:   Bolivar1   center_dist_d2

ID, description, units MPD:63447   center_dist_d2   distance traveled in center, 5 min test in dark   [cm]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - distance traveled in center, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means171.2   cm 243.1   cm
Median of the strain means176.8   cm 278.3   cm
SD of the strain means± 71.42 ± 166.5
Coefficient of variation (CV)0.4172 0.685
Min–max range of strain means60.0   –   271.8   cm 26.083   –   489.9   cm
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 310176.6 310176.6 16.1479 0.0001
strain 9 1675589.7667 186176.6407 9.6924 < 0.0001
sex:strain 9 1869981.5667 207775.7296 10.8169 < 0.0001
Residuals 220 4225858.6667 19208.4485


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 232.7 198.9   12 57.43 0.8551 3.0, 660.0 0.86
129S1/SvImJ m 53.42 81.33   12 23.478 1.5226 -1.14
A/J f 60.0 81.15   12 23.427 1.3526 -1.56
A/J m 43.917 85.46   12 24.669 1.9459 -1.2
B6129SF1/J f 110.2 136.0   12 39.266 1.2337 -0.85
B6129SF1/J m 293.9 185.2   12 53.48 0.6303 26.0, 651.0 0.31
B6C3F1/J f 243.4 135.5   12 39.106 0.5565 14.0, 503.0 1.01
B6C3F1/J m 293.8 117.5   12 33.924 0.4001 93.0, 406.0 0.3
BALB/cByJ f 214.8 170.0   12 49.085 0.7915 13.0, 531.0 0.61
BALB/cByJ m 479.3 180.1   12 51.99 0.3757 190.0, 823.0 1.42
C3H/HeJ f 138.7 91.39   12 26.383 0.6591 5.0, 265.0 -0.46
C3H/HeJ m 284.0 82.04   12 23.682 0.2889 166.0, 410.0 0.25
C57BL/6J f 193.5 56.2   12 16.225 0.2905 99.0, 257.0 0.31
C57BL/6J m 194.1 81.73   12 23.594 0.4211 86.0, 315.0 -0.29
CBA/J f 86.75 115.6   12 33.379 1.3329 -1.18
CBA/J m 272.6 126.0   12 36.38 0.4623 74.0, 503.0 0.18
DBA/2J f 271.8 222.5   12 64.24 0.8189 13.0, 622.0 1.41
DBA/2J m 26.083 46.535   12 13.434 1.7841 -1.3
FVB/NJ f 160.2 136.8   12 39.496 0.8542 -0.15
FVB/NJ m 489.9 230.6   12 66.57 0.4707 48.0, 925.0 1.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 232.6667 40.0088 311.5162 153.8171
129S1/SvImJ m 53.4167 40.0088 132.2662 -25.4329
A/J f 60.0 40.0088 138.8496 -18.8496
A/J m 43.9167 40.0088 122.7662 -34.9329
B6129SF1/J f 110.25 40.0088 189.0996 31.4004
B6129SF1/J m 293.9167 40.0088 372.7662 215.0671
B6C3F1/J f 243.4167 40.0088 322.2662 164.5671
B6C3F1/J m 293.75 40.0088 372.5996 214.9004
BALB/cByJ f 214.8333 40.0088 293.6829 135.9838
BALB/cByJ m 479.3333 40.0088 558.1829 400.4838
C3H/HeJ f 138.6667 40.0088 217.5162 59.8171
C3H/HeJ m 284.0 40.0088 362.8496 205.1504
C57BL/6J f 193.5 40.0088 272.3496 114.6504
C57BL/6J m 194.0833 40.0088 272.9329 115.2338
CBA/J f 86.75 40.0088 165.5996 7.9004
CBA/J m 272.5833 40.0088 351.4329 193.7338
DBA/2J f 271.75 40.0088 350.5996 192.9004
DBA/2J m 26.0833 40.0088 104.9329 -52.7662
FVB/NJ f 160.1667 40.0088 239.0162 81.3171
FVB/NJ m 489.9167 40.0088 568.7662 411.0671


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 143.0417 28.2905 198.7967 87.2866
A/J both 51.9583 28.2905 107.7134 -3.7967
B6129SF1/J both 202.0833 28.2905 257.8384 146.3283
B6C3F1/J both 268.5833 28.2905 324.3384 212.8283
BALB/cByJ both 347.0833 28.2905 402.8384 291.3283
C3H/HeJ both 211.3333 28.2905 267.0884 155.5783
C57BL/6J both 193.7917 28.2905 249.5467 138.0366
CBA/J both 179.6667 28.2905 235.4217 123.9116
DBA/2J both 148.9167 28.2905 204.6717 93.1616
FVB/NJ both 325.0417 28.2905 380.7967 269.2866




  GWAS USING LINEAR MIXED MODELS