Project measure / variable:   Bolivar1   center_dist_d1

ID, description, units MPD:63446   center_dist_d1   distance traveled in center, 5 min test in dark   [cm]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - distance traveled in center, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means236.9   cm 315.5   cm
Median of the strain means266.9   cm 369.9   cm
SD of the strain means± 87.62 ± 195.6
Coefficient of variation (CV)0.3699 0.6201
Min–max range of strain means79.33   –   363.5   cm 32.333   –   572.7   cm
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 370284.7042 370284.7042 18.1104 < 0.0001
strain 9 2509158.6708 278795.4079 13.6357 < 0.0001
sex:strain 9 2452020.1708 272446.6856 13.3252 < 0.0001
Residuals 220 4498110.25 20445.9557


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 293.2 223.9   12 64.63 0.7634 8.0, 576.0 0.64
129S1/SvImJ m 116.8 153.4   12 44.287 1.3131 -1.02
A/J f 79.33 88.16   12 25.449 1.1112 3.0, 281.0 -1.8
A/J m 32.333 58.2   12 16.802 1.8001 3.0, 213.0 -1.45
B6129SF1/J f 262.8 211.7   12 61.11 0.8056 3.0, 606.0 0.3
B6129SF1/J m 414.0 166.2   12 47.977 0.4014 101.0, 658.0 0.5
B6C3F1/J f 309.1 104.3   12 30.122 0.3376 171.0, 561.0 0.82
B6C3F1/J m 399.8 146.1   12 42.183 0.3655 177.0, 609.0 0.43
BALB/cByJ f 271.0 161.1   12 46.504 0.5944 44.0, 475.0 0.39
BALB/cByJ m 572.7 80.65   12 23.282 0.1408 431.0, 698.0 1.32
C3H/HeJ f 159.1 119.1   12 34.393 0.7489 22.0, 425.0 -0.89
C3H/HeJ m 456.4 185.6   12 53.57 0.4066 226.0, 769.0 0.72
C57BL/6J f 289.0 109.6   12 31.628 0.3791 104.0, 526.0 0.59
C57BL/6J m 340.0 94.65   12 27.324 0.2784 121.0, 455.0 0.13
CBA/J f 153.9 127.0   12 36.653 0.8249 33.0, 406.0 -0.95
CBA/J m 248.8 106.8   12 30.827 0.4291 95.0, 498.0 -0.34
DBA/2J f 363.5 179.6   12 51.83 0.494 48.0, 653.0 1.44
DBA/2J m 46.917 41.693   12 12.036 0.8887 3.0, 125.0 -1.37
FVB/NJ f 188.2 125.9   12 36.352 0.6689 21.0, 353.0 -0.56
FVB/NJ m 526.9 200.1   12 57.75 0.3797 120.0, 877.0 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 293.25 41.2775 374.5999 211.9001
129S1/SvImJ m 116.8333 41.2775 198.1832 35.4835
A/J f 79.3333 41.2775 160.6832 -2.0165
A/J m 32.3333 41.2775 113.6832 -49.0165
B6129SF1/J f 262.75 41.2775 344.0999 181.4001
B6129SF1/J m 414.0 41.2775 495.3499 332.6501
B6C3F1/J f 309.0833 41.2775 390.4332 227.7335
B6C3F1/J m 399.8333 41.2775 481.1832 318.4835
BALB/cByJ f 271.0 41.2775 352.3499 189.6501
BALB/cByJ m 572.6667 41.2775 654.0165 491.3168
C3H/HeJ f 159.0833 41.2775 240.4332 77.7335
C3H/HeJ m 456.4167 41.2775 537.7665 375.0668
C57BL/6J f 289.0 41.2775 370.3499 207.6501
C57BL/6J m 340.0 41.2775 421.3499 258.6501
CBA/J f 153.9167 41.2775 235.2665 72.5668
CBA/J m 248.8333 41.2775 330.1832 167.4835
DBA/2J f 363.5 41.2775 444.8499 282.1501
DBA/2J m 46.9167 41.2775 128.2665 -34.4332
FVB/NJ f 188.25 41.2775 269.5999 106.9001
FVB/NJ m 526.9167 41.2775 608.2665 445.5668


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 205.0417 29.1876 262.5647 147.5186
A/J both 55.8333 29.1876 113.3564 -1.6897
B6129SF1/J both 338.375 29.1876 395.898 280.852
B6C3F1/J both 354.4583 29.1876 411.9814 296.9353
BALB/cByJ both 421.8333 29.1876 479.3564 364.3103
C3H/HeJ both 307.75 29.1876 365.273 250.227
C57BL/6J both 314.5 29.1876 372.023 256.977
CBA/J both 201.375 29.1876 258.898 143.852
DBA/2J both 205.2083 29.1876 262.7314 147.6853
FVB/NJ both 357.5833 29.1876 415.1064 300.0603




  GWAS USING LINEAR MIXED MODELS