Project measure / variable:   Bolivar1   margin_time_pct_d3

ID, description, units MPD:63445   margin_time_pct_d3   percentage of time spent in periphery, 5 min test in dark   [%]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in periphery, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means93.54   % 91.16   %
Median of the strain means93.38   % 91.76   %
SD of the strain means± 2.6439 ± 5.6115
Coefficient of variation (CV)0.0283 0.0616
Min–max range of strain means88.43   –   96.73   % 81.71   –   98.38   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 340.8961 340.8961 11.8265 0.0007
strain 9 2255.065 250.5628 8.6926 < 0.0001
sex:strain 9 1901.756 211.3062 7.3307 < 0.0001
Residuals 220 6341.4745 28.8249


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 95.16 4.091   12 1.181 0.043 86.7, 100.0 0.61
129S1/SvImJ m 98.02 2.969   12 0.85707 0.0303 90.23333333, 100.0 1.22
A/J f 95.99 4.5875   12 1.3243 0.0478 84.2, 100.0 0.93
A/J m 94.64 5.6227   12 1.6231 0.0594 84.53333333, 100.0 0.62
B6129SF1/J f 96.73 4.7986   12 1.3852 0.0496 87.03333333, 100.0 1.21
B6129SF1/J m 91.96 5.2365   12 1.5117 0.0569 82.93333333, 99.7 0.14
B6C3F1/J f 92.17 5.5353   12 1.5979 0.0601 83.3, 99.73333333 -0.52
B6C3F1/J m 91.56 5.11   12 1.4751 0.0558 84.0, 100.0 0.07
BALB/cByJ f 88.43 7.9402   12 2.2921 0.0898 76.5, 98.83333333 -1.93
BALB/cByJ m 89.49 5.9333   12 1.7128 0.0663 77.16666667, 98.5 -0.3
C3H/HeJ f 93.12 5.1358   12 1.4826 0.0552 82.33333333, 99.76666667 -0.16
C3H/HeJ m 87.37 7.5732   12 2.1862 0.0867 66.63333333, 97.63333333 -0.67
C57BL/6J f 93.64 3.4325   12 0.99087 0.0367 87.53333333, 97.16666667 0.04
C57BL/6J m 94.56 4.1512   12 1.1983 0.0439 84.93333333, 99.66666667 0.61
CBA/J f 96.52 4.5994   12 1.3277 0.0477 85.73333333, 100.0 1.13
CBA/J m 81.71 4.6936   12 1.3549 0.0574 73.33333333, 87.43333333 -1.68
DBA/2J f 92.54 4.6549   12 1.3438 0.0503 86.36666667, 99.73333333 -0.38
DBA/2J m 98.38 3.349   12 0.96676 0.034 88.2, 100.0 1.29
FVB/NJ f 91.08 7.5318   12 2.1742 0.0827 77.8, 99.96666667 -0.93
FVB/NJ m 83.86 6.8773   12 1.9853 0.082 73.5, 95.63333333 -1.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 95.1611 1.5499 98.2156 92.1066
129S1/SvImJ m 98.0222 1.5499 101.0767 94.9677
A/J f 95.9861 1.5499 99.0406 92.9316
A/J m 94.6389 1.5499 97.6934 91.5844
B6129SF1/J f 96.7278 1.5499 99.7823 93.6733
B6129SF1/J m 91.9611 1.5499 95.0156 88.9066
B6C3F1/J f 92.1694 1.5499 95.2239 89.115
B6C3F1/J m 91.5611 1.5499 94.6156 88.5066
BALB/cByJ f 88.4278 1.5499 91.4823 85.3733
BALB/cByJ m 89.4889 1.5499 92.5434 86.4344
C3H/HeJ f 93.1194 1.5499 96.1739 90.065
C3H/HeJ m 87.3694 1.5499 90.4239 84.315
C57BL/6J f 93.6417 1.5499 96.6961 90.5872
C57BL/6J m 94.5611 1.5499 97.6156 91.5066
CBA/J f 96.5222 1.5499 99.5767 93.4677
CBA/J m 81.7056 1.5499 84.76 78.6511
DBA/2J f 92.5444 1.5499 95.5989 89.49
DBA/2J m 98.375 1.5499 101.4295 95.3205
FVB/NJ f 91.0778 1.5499 94.1323 88.0233
FVB/NJ m 83.8583 1.5499 86.9128 80.8039


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 96.5917 1.0959 98.7515 94.4318
A/J both 95.3125 1.0959 97.4723 93.1527
B6129SF1/J both 94.3444 1.0959 96.5043 92.1846
B6C3F1/J both 91.8653 1.0959 94.0251 89.7054
BALB/cByJ both 88.9583 1.0959 91.1182 86.7985
C3H/HeJ both 90.2444 1.0959 92.4043 88.0846
C57BL/6J both 94.1014 1.0959 96.2612 91.9415
CBA/J both 89.1139 1.0959 91.2737 86.954
DBA/2J both 95.4597 1.0959 97.6196 93.2999
FVB/NJ both 87.4681 1.0959 89.6279 85.3082




  GWAS USING LINEAR MIXED MODELS