Project measure / variable:   Bolivar1   margin_time_pct_d1

ID, description, units MPD:63443   margin_time_pct_d1   percentage of time spent in periphery, 5 min test in dark   [%]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in periphery, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means88.49   % 86.87   %
Median of the strain means88.33   % 87.3   %
SD of the strain means± 3.0629 ± 5.5312
Coefficient of variation (CV)0.0346 0.0637
Min–max range of strain means84.53   –   94.2   % 77.56   –   95.35   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 157.9504 157.9504 5.4992 0.0199
strain 9 2397.5988 266.3999 9.275 < 0.0001
sex:strain 9 1919.287 213.2541 7.4247 < 0.0001
Residuals 220 6318.9103 28.7223


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 88.29 6.743   12 1.9465 0.0764 74.13333333, 98.16666667 -0.07
129S1/SvImJ m 90.21 6.3091   12 1.8213 0.0699 76.7, 99.86666667 0.6
A/J f 94.2 4.5783   12 1.3216 0.0486 84.7, 98.7 1.86
A/J m 95.35 5.3189   12 1.5354 0.0558 81.56666667, 99.73333333 1.53
B6129SF1/J f 88.36 7.4804   12 2.1594 0.0847 77.7, 98.66666667 -0.04
B6129SF1/J m 88.14 4.3448   12 1.2542 0.0493 78.16666667, 94.33333333 0.23
B6C3F1/J f 86.76 3.7245   12 1.0752 0.0429 80.43333333, 91.66666667 -0.57
B6C3F1/J m 86.58 3.0972   12 0.89407 0.0358 82.36666667, 93.56666667 -0.05
BALB/cByJ f 86.11 7.1771   12 2.0718 0.0834 72.13333333, 96.13333333 -0.78
BALB/cByJ m 77.56 3.4699   12 1.0017 0.0447 72.76666667, 83.26666667 -1.68
C3H/HeJ f 91.31 4.3549   12 1.2571 0.0477 83.83333333, 97.43333333 0.92
C3H/HeJ m 85.48 4.2877   12 1.2378 0.0502 77.36666667, 92.2 -0.25
C57BL/6J f 84.53 5.4616   12 1.5766 0.0646 72.73333333, 92.13333333 -1.29
C57BL/6J m 88.01 4.5164   12 1.3038 0.0513 79.0, 93.4 0.21
CBA/J f 91.54 4.7065   12 1.3586 0.0514 83.26666667, 97.63333333 1.0
CBA/J m 80.18 7.5305   12 2.1739 0.0939 65.66666667, 91.86666667 -1.21
DBA/2J f 85.3 3.0369   12 0.87668 0.0356 78.03333333, 89.1 -1.04
DBA/2J m 93.59 5.0485   12 1.4574 0.0539 80.16666667, 99.8 1.22
FVB/NJ f 88.51 7.6055   12 2.1955 0.0859 69.33333333, 97.53333333 0.01
FVB/NJ m 83.59 4.3686   12 1.2611 0.0523 80.6, 92.66666667 -0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 88.2944 1.5471 91.3435 85.2454
129S1/SvImJ m 90.2083 1.5471 93.2574 87.1593
A/J f 94.1972 1.5471 97.2463 91.1482
A/J m 95.35 1.5471 98.399 92.301
B6129SF1/J f 88.3611 1.5471 91.4101 85.3121
B6129SF1/J m 88.1389 1.5471 91.1879 85.0899
B6C3F1/J f 86.7611 1.5471 89.8101 83.7121
B6C3F1/J m 86.5778 1.5471 89.6268 83.5287
BALB/cByJ f 86.1056 1.5471 89.1546 83.0565
BALB/cByJ m 77.5639 1.5471 80.6129 74.5149
C3H/HeJ f 91.3139 1.5471 94.3629 88.2649
C3H/HeJ m 85.475 1.5471 88.524 82.426
C57BL/6J f 84.5306 1.5471 87.5796 81.4815
C57BL/6J m 88.0111 1.5471 91.0601 84.9621
CBA/J f 91.5417 1.5471 94.5907 88.4926
CBA/J m 80.1833 1.5471 83.2324 77.1343
DBA/2J f 85.3028 1.5471 88.3518 82.2537
DBA/2J m 93.5944 1.5471 96.6435 90.5454
FVB/NJ f 88.5056 1.5471 91.5546 85.4565
FVB/NJ m 83.5861 1.5471 86.6351 80.5371


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 89.2514 1.094 91.4074 87.0954
A/J both 94.7736 1.094 96.9296 92.6176
B6129SF1/J both 88.25 1.094 90.406 86.094
B6C3F1/J both 86.6694 1.094 88.8254 84.5134
BALB/cByJ both 81.8347 1.094 83.9907 79.6787
C3H/HeJ both 88.3944 1.094 90.5504 86.2384
C57BL/6J both 86.2708 1.094 88.4268 84.1148
CBA/J both 85.8625 1.094 88.0185 83.7065
DBA/2J both 89.4486 1.094 91.6046 87.2926
FVB/NJ both 86.0458 1.094 88.2018 83.8898




  GWAS USING LINEAR MIXED MODELS