Project measure / variable:   Bolivar1   tot_dist_d3

ID, description, units MPD:63439   tot_dist_d3   distance traveled, 5 min test in dark   [cm]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - distance traveled, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1090.0   cm 1197.0   cm
Median of the strain means1142.0   cm 1105.0   cm
SD of the strain means± 447.2 ± 426.4
Coefficient of variation (CV)0.4101 0.3564
Min–max range of strain means424.6   –   1740.0   cm 411.6   –   1812.0   cm
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 675644.8167 675644.8167 6.2463 0.0132
strain 9 38820645.3167 4313405.0352 39.8772 < 0.0001
sex:strain 9 2405482.4333 267275.8259 2.471 0.0105
Residuals 220 23796765.1667 108167.1144


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 424.6 134.1   12 38.724 0.3159 202.0, 617.0 -1.49
129S1/SvImJ m 411.6 131.2   12 37.879 0.3188 239.0, 607.0 -1.84
A/J f 593.8 338.6   12 97.75 0.5702 64.0, 1024.0 -1.11
A/J m 1036.0 620.0   12 179.0 0.5982 208.0, 2132.0 -0.38
B6129SF1/J f 558.2 176.6   12 50.99 0.3165 287.0, 846.0 -1.19
B6129SF1/J m 898.8 111.7   12 32.238 0.1242 712.0, 1042.0 -0.7
B6C3F1/J f 1239.0 72.3   12 20.872 0.0584 1126.0, 1354.0 0.33
B6C3F1/J m 1167.0 136.6   12 39.445 0.1171 1014.0, 1484.0 -0.07
BALB/cByJ f 1547.0 473.6   12 136.7 0.3062 745.0, 2326.0 1.02
BALB/cByJ m 1525.0 613.6   12 177.1 0.4024 632.0, 2315.0 0.77
C3H/HeJ f 1006.0 223.8   12 64.59 0.2223 717.0, 1545.0 -0.19
C3H/HeJ m 975.2 192.7   12 55.62 0.1976 630.0, 1268.0 -0.52
C57BL/6J f 1409.0 428.7   12 123.8 0.3043 700.0, 2187.0 0.71
C57BL/6J m 1327.0 84.46   12 24.383 0.0636 1179.0, 1445.0 0.31
CBA/J f 1045.0 249.4   12 71.99 0.2386 549.0, 1397.0 -0.1
CBA/J m 1043.0 264.5   12 76.34 0.2535 596.0, 1541.0 -0.36
DBA/2J f 1342.0 486.9   12 140.6 0.3628 620.0, 2403.0 0.56
DBA/2J m 1770.0 192.8   12 55.65 0.1089 1420.0, 2112.0 1.34
FVB/NJ f 1740.0 358.3   12 103.4 0.2059 1114.0, 2287.0 1.45
FVB/NJ m 1812.0 384.6   12 111.0 0.2123 1396.0, 2576.0 1.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 424.5833 94.9417 611.695 237.4717
129S1/SvImJ m 411.5833 94.9417 598.695 224.4717
A/J f 593.8333 94.9417 780.945 406.7217
A/J m 1036.5 94.9417 1223.6116 849.3884
B6129SF1/J f 558.1667 94.9417 745.2783 371.055
B6129SF1/J m 898.8333 94.9417 1085.945 711.7217
B6C3F1/J f 1238.9167 94.9417 1426.0283 1051.805
B6C3F1/J m 1166.9167 94.9417 1354.0283 979.805
BALB/cByJ f 1546.5833 94.9417 1733.695 1359.4717
BALB/cByJ m 1524.75 94.9417 1711.8616 1337.6384
C3H/HeJ f 1006.4167 94.9417 1193.5283 819.305
C3H/HeJ m 975.1667 94.9417 1162.2783 788.055
C57BL/6J f 1408.75 94.9417 1595.8616 1221.6384
C57BL/6J m 1327.0833 94.9417 1514.195 1139.9717
CBA/J f 1045.0 94.9417 1232.1116 857.8884
CBA/J m 1043.25 94.9417 1230.3616 856.1384
DBA/2J f 1342.25 94.9417 1529.3616 1155.1384
DBA/2J m 1769.9167 94.9417 1957.0283 1582.805
FVB/NJ f 1740.25 94.9417 1927.3616 1553.1384
FVB/NJ m 1811.9167 94.9417 1999.0283 1624.805


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 418.0833 67.1339 550.3912 285.7754
A/J both 815.1667 67.1339 947.4746 682.8588
B6129SF1/J both 728.5 67.1339 860.8079 596.1921
B6C3F1/J both 1202.9167 67.1339 1335.2246 1070.6088
BALB/cByJ both 1535.6667 67.1339 1667.9746 1403.3588
C3H/HeJ both 990.7917 67.1339 1123.0996 858.4838
C57BL/6J both 1367.9167 67.1339 1500.2246 1235.6088
CBA/J both 1044.125 67.1339 1176.4329 911.8171
DBA/2J both 1556.0833 67.1339 1688.3912 1423.7754
FVB/NJ both 1776.0833 67.1339 1908.3912 1643.7754




  GWAS USING LINEAR MIXED MODELS