Project measure / variable:   Bolivar1   tot_dist_d2

ID, description, units MPD:63438   tot_dist_d2   distance traveled, 5 min test in dark   [cm]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - distance traveled, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1130.0   cm 1247.0   cm
Median of the strain means1142.0   cm 1202.0   cm
SD of the strain means± 448.0 ± 467.4
Coefficient of variation (CV)0.3963 0.3749
Min–max range of strain means509.8   –   1792.0   cm 578.2   –   1986.0   cm
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 811076.2667 811076.2667 8.9318 0.0031
strain 9 40598419.5167 4510935.5019 49.6757 < 0.0001
sex:strain 9 4686704.5667 520744.9519 5.7346 < 0.0001
Residuals 220 19977682.8333 90807.6492


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 509.8 220.5   12 63.66 0.4325 145.0, 847.0 -1.39
129S1/SvImJ m 578.2 278.9   12 80.52 0.4825 355.0, 1167.0 -1.43
A/J f 617.1 275.2   12 79.43 0.4459 165.0, 1028.0 -1.15
A/J m 657.5 299.2   12 86.39 0.4551 165.0, 1283.0 -1.26
B6129SF1/J f 659.2 218.8   12 63.17 0.332 332.0, 1035.0 -1.05
B6129SF1/J m 1140.0 164.5   12 47.483 0.1442 869.0, 1488.0 -0.23
B6C3F1/J f 1317.0 229.6   12 66.27 0.1743 909.0, 1674.0 0.42
B6C3F1/J m 1265.0 189.4   12 54.67 0.1497 981.0, 1587.0 0.04
BALB/cByJ f 1606.0 536.9   12 155.0 0.3342 907.0, 2523.0 1.06
BALB/cByJ m 1701.0 342.9   12 98.99 0.2016 1234.0, 2314.0 0.97
C3H/HeJ f 955.5 162.4   12 46.883 0.17 754.0, 1308.0 -0.39
C3H/HeJ m 950.6 236.7   12 68.33 0.249 554.0, 1496.0 -0.63
C57BL/6J f 1792.0 468.4   12 135.2 0.2614 998.0, 2695.0 1.48
C57BL/6J m 1495.0 317.5   12 91.64 0.2124 1097.0, 2118.0 0.53
CBA/J f 1046.0 223.5   12 64.51 0.2138 736.0, 1408.0 -0.19
CBA/J m 1002.0 229.2   12 66.17 0.2288 591.0, 1496.0 -0.52
DBA/2J f 1238.0 478.5   12 138.1 0.3864 112.0, 1823.0 0.24
DBA/2J m 1986.0 171.5   12 49.506 0.0863 1716.0, 2264.0 1.58
FVB/NJ f 1564.0 296.2   12 85.51 0.1895 1173.0, 2073.0 0.97
FVB/NJ m 1692.0 322.4   12 93.06 0.1906 1126.0, 2143.0 0.95


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 509.8333 86.9903 681.2742 338.3925
129S1/SvImJ m 578.1667 86.9903 749.6075 406.7258
A/J f 617.0833 86.9903 788.5242 445.6425
A/J m 657.5 86.9903 828.9409 486.0591
B6129SF1/J f 659.1667 86.9903 830.6075 487.7258
B6129SF1/J m 1140.5 86.9903 1311.9409 969.0591
B6C3F1/J f 1317.4167 86.9903 1488.8575 1145.9758
B6C3F1/J m 1265.0 86.9903 1436.4409 1093.5591
BALB/cByJ f 1606.4167 86.9903 1777.8575 1434.9758
BALB/cByJ m 1701.4167 86.9903 1872.8575 1529.9758
C3H/HeJ f 955.5 86.9903 1126.9409 784.0591
C3H/HeJ m 950.5833 86.9903 1122.0242 779.1425
C57BL/6J f 1792.0 86.9903 1963.4409 1620.5591
C57BL/6J m 1494.5833 86.9903 1666.0242 1323.1425
CBA/J f 1045.5 86.9903 1216.9409 874.0591
CBA/J m 1001.6667 86.9903 1173.1075 830.2258
DBA/2J f 1238.3333 86.9903 1409.7742 1066.8925
DBA/2J m 1986.5 86.9903 2157.9409 1815.0591
FVB/NJ f 1563.5 86.9903 1734.9409 1392.0591
FVB/NJ m 1691.5 86.9903 1862.9409 1520.0591


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 544.0 61.5114 665.227 422.773
A/J both 637.2917 61.5114 758.5187 516.0647
B6129SF1/J both 899.8333 61.5114 1021.0603 778.6063
B6C3F1/J both 1291.2083 61.5114 1412.4353 1169.9813
BALB/cByJ both 1653.9167 61.5114 1775.1437 1532.6897
C3H/HeJ both 953.0417 61.5114 1074.2687 831.8147
C57BL/6J both 1643.2917 61.5114 1764.5187 1522.0647
CBA/J both 1023.5833 61.5114 1144.8103 902.3563
DBA/2J both 1612.4167 61.5114 1733.6437 1491.1897
FVB/NJ both 1627.5 61.5114 1748.727 1506.273




  GWAS USING LINEAR MIXED MODELS