Project measure / variable:   Bolivar1   tot_dist_d1

ID, description, units MPD:63437   tot_dist_d1   distance traveled, 5 min test in dark   [cm]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - distance traveled, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1126.0   cm 1272.0   cm
Median of the strain means1062.0   cm 1364.0   cm
SD of the strain means± 403.8 ± 482.3
Coefficient of variation (CV)0.3585 0.3791
Min–max range of strain means465.0   –   1923.0   cm 485.8   –   1872.0   cm
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1281735.5042 1281735.5042 15.193 0.0001
strain 9 38891107.3375 4321234.1486 51.2217 < 0.0001
sex:strain 9 3837041.5375 426337.9486 5.0536 < 0.0001
Residuals 220 18559932.4167 84363.3292


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 769.9 407.4   12 117.6 0.5292 203.0, 1497.0 -0.88
129S1/SvImJ m 585.0 337.1   12 97.3 0.5762 93.0, 1209.0 -1.43
A/J f 465.0 221.9   12 64.06 0.4773 135.0, 843.0 -1.64
A/J m 485.8 224.3   12 64.74 0.4616 170.0, 908.0 -1.63
B6129SF1/J f 1056.0 287.8   12 83.08 0.2724 644.0, 1587.0 -0.17
B6129SF1/J m 1369.0 320.5   12 92.53 0.2341 980.0, 2004.0 0.2
B6C3F1/J f 1225.0 167.3   12 48.309 0.1366 914.0, 1451.0 0.24
B6C3F1/J m 1360.0 291.2   12 84.05 0.214 889.0, 1992.0 0.18
BALB/cByJ f 1408.0 381.8   12 110.2 0.2712 719.0, 1859.0 0.7
BALB/cByJ m 1682.0 259.6   12 74.95 0.1544 1252.0, 2090.0 0.85
C3H/HeJ f 871.6 159.8   12 46.13 0.1833 658.0, 1089.0 -0.63
C3H/HeJ m 1154.0 251.5   12 72.61 0.218 709.0, 1547.0 -0.25
C57BL/6J f 1923.0 321.1   12 92.69 0.167 1465.0, 2575.0 1.97
C57BL/6J m 1872.0 266.3   12 76.88 0.1423 1453.0, 2339.0 1.24
CBA/J f 1069.0 245.6   12 70.9 0.2298 662.0, 1528.0 -0.14
CBA/J m 904.9 174.0   12 50.23 0.1923 620.0, 1306.0 -0.76
DBA/2J f 1036.0 337.9   12 97.54 0.3263 323.0, 1496.0 -0.22
DBA/2J m 1744.0 371.0   12 107.1 0.2127 1155.0, 2507.0 0.98
FVB/NJ f 1439.0 251.1   12 72.49 0.1745 1031.0, 1841.0 0.77
FVB/NJ m 1567.0 358.1   12 103.4 0.2286 1042.0, 2250.0 0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 769.9167 83.8467 935.1623 604.671
129S1/SvImJ m 585.0 83.8467 750.2456 419.7544
A/J f 465.0 83.8467 630.2456 299.7544
A/J m 485.8333 83.8467 651.079 320.5877
B6129SF1/J f 1056.5 83.8467 1221.7456 891.2544
B6129SF1/J m 1369.0833 83.8467 1534.329 1203.8377
B6C3F1/J f 1224.9167 83.8467 1390.1623 1059.671
B6C3F1/J m 1360.4167 83.8467 1525.6623 1195.171
BALB/cByJ f 1408.1667 83.8467 1573.4123 1242.921
BALB/cByJ m 1682.0833 83.8467 1847.329 1516.8377
C3H/HeJ f 871.5833 83.8467 1036.829 706.3377
C3H/HeJ m 1154.0833 83.8467 1319.329 988.8377
C57BL/6J f 1923.0 83.8467 2088.2456 1757.7544
C57BL/6J m 1871.6667 83.8467 2036.9123 1706.421
CBA/J f 1068.5833 83.8467 1233.829 903.3377
CBA/J m 904.9167 83.8467 1070.1623 739.671
DBA/2J f 1035.5833 83.8467 1200.829 870.3377
DBA/2J m 1744.0 83.8467 1909.2456 1578.7544
FVB/NJ f 1439.0 83.8467 1604.2456 1273.7544
FVB/NJ m 1566.75 83.8467 1731.9956 1401.5044


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 677.4583 59.2886 794.3046 560.612
A/J both 475.4167 59.2886 592.263 358.5704
B6129SF1/J both 1212.7917 59.2886 1329.638 1095.9454
B6C3F1/J both 1292.6667 59.2886 1409.513 1175.8204
BALB/cByJ both 1545.125 59.2886 1661.9713 1428.2787
C3H/HeJ both 1012.8333 59.2886 1129.6796 895.987
C57BL/6J both 1897.3333 59.2886 2014.1796 1780.487
CBA/J both 986.75 59.2886 1103.5963 869.9037
DBA/2J both 1389.7917 59.2886 1506.638 1272.9454
FVB/NJ both 1502.875 59.2886 1619.7213 1386.0287




  GWAS USING LINEAR MIXED MODELS