Project measure / variable:   Bolivar1   cc_revs_d2

ID, description, units MPD:63435   cc_revs_d2   number of counter-clockwise revolution episodes, 5 min test in dark   [n]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of counter-clockwise revolution episodes, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means3.5167   n 4.1583   n
Median of the strain means3.2084   n 4.5417   n
SD of the strain means± 1.0649 ± 1.6089
Coefficient of variation (CV)0.3028 0.3869
Min–max range of strain means2.1667   –   5.4167   n 1.75   –   6.25   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 24.7042 24.7042 5.0421 0.0257
strain 9 258.8708 28.7634 5.8705 < 0.0001
sex:strain 9 143.1708 15.9079 3.2468 0.001
Residuals 220 1077.9167 4.8996


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.1667 2.4058   12 0.69449 0.7597 -0.33
129S1/SvImJ m 1.9167 2.4664   12 0.712 1.2868 -1.39
A/J f 2.4167 2.1088   12 0.60875 0.8726 -1.03
A/J m 1.75 1.1382   12 0.32856 0.6504 -1.5
B6129SF1/J f 3.5 1.446   12 0.41742 0.4131 1.0, 6.0 -0.02
B6129SF1/J m 5.0 2.3355   12 0.6742 0.4671 0.52
B6C3F1/J f 5.4167 2.7784   12 0.80206 0.5129 2.0, 12.0 1.78
B6C3F1/J m 5.5833 1.7816   12 0.51432 0.3191 3.0, 8.0 0.89
BALB/cByJ f 3.0833 1.9752   12 0.5702 0.6406 -0.41
BALB/cByJ m 5.6667 2.64   12 0.76211 0.4659 2.0, 11.0 0.94
C3H/HeJ f 3.1667 1.6422   12 0.47408 0.5186 1.0, 6.0 -0.33
C3H/HeJ m 5.0833 1.9287   12 0.55675 0.3794 2.0, 8.0 0.57
C57BL/6J f 3.75 1.4848   12 0.42862 0.3959 1.0, 6.0 0.22
C57BL/6J m 4.0833 2.3916   12 0.69039 0.5857 1.0, 8.0 -0.05
CBA/J f 2.1667 1.9924   12 0.57516 0.9196 -1.27
CBA/J m 2.9167 1.3114   12 0.37856 0.4496 1.0, 5.0 -0.77
DBA/2J f 5.25 1.9598   12 0.56575 0.3733 2.0, 8.0 1.63
DBA/2J m 3.3333 3.4201   12 0.98729 1.026 -0.51
FVB/NJ f 3.25 2.2208   12 0.64108 0.6833 1.0, 7.0 -0.25
FVB/NJ m 6.25 3.2509   12 0.93845 0.5201 3.0, 14.0 1.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.1667 0.639 4.426 1.9074
129S1/SvImJ m 1.9167 0.639 3.176 0.6574
A/J f 2.4167 0.639 3.676 1.1574
A/J m 1.75 0.639 3.0093 0.4907
B6129SF1/J f 3.5 0.639 4.7593 2.2407
B6129SF1/J m 5.0 0.639 6.2593 3.7407
B6C3F1/J f 5.4167 0.639 6.676 4.1574
B6C3F1/J m 5.5833 0.639 6.8426 4.324
BALB/cByJ f 3.0833 0.639 4.3426 1.824
BALB/cByJ m 5.6667 0.639 6.926 4.4074
C3H/HeJ f 3.1667 0.639 4.426 1.9074
C3H/HeJ m 5.0833 0.639 6.3426 3.824
C57BL/6J f 3.75 0.639 5.0093 2.4907
C57BL/6J m 4.0833 0.639 5.3426 2.824
CBA/J f 2.1667 0.639 3.426 0.9074
CBA/J m 2.9167 0.639 4.176 1.6574
DBA/2J f 5.25 0.639 6.5093 3.9907
DBA/2J m 3.3333 0.639 4.5926 2.074
FVB/NJ f 3.25 0.639 4.5093 1.9907
FVB/NJ m 6.25 0.639 7.5093 4.9907


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.5417 0.4518 3.4321 1.6512
A/J both 2.0833 0.4518 2.9738 1.1929
B6129SF1/J both 4.25 0.4518 5.1405 3.3595
B6C3F1/J both 5.5 0.4518 6.3905 4.6095
BALB/cByJ both 4.375 0.4518 5.2655 3.4845
C3H/HeJ both 4.125 0.4518 5.0155 3.2345
C57BL/6J both 3.9167 0.4518 4.8071 3.0262
CBA/J both 2.5417 0.4518 3.4321 1.6512
DBA/2J both 4.2917 0.4518 5.1821 3.4012
FVB/NJ both 4.75 0.4518 5.6405 3.8595




  GWAS USING LINEAR MIXED MODELS