Project measure / variable:   Bolivar1   stereo_time_pct_d3

ID, description, units MPD:63430   stereo_time_pct_d3   percentage of time spent moving stereotypically, 5 min test in dark   [%]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent moving stereotypically, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means12.959   % 15.704   %
Median of the strain means13.321   % 15.093   %
SD of the strain means± 1.5929 ± 2.9434
Coefficient of variation (CV)0.1229 0.1874
Min–max range of strain means10.386   –   14.636   % 12.675   –   23.008   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 452.1015 452.1015 12.4026 0.0005
strain 9 702.1601 78.0178 2.1403 0.0274
sex:strain 9 507.5808 56.3979 1.5472 0.1329
Residuals 220 8019.5011 36.4523


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 12.661 8.3449   12 2.409 0.6591 3.2, 31.66666667 -0.19
129S1/SvImJ m 13.106 11.643   12 3.3612 0.8884 1.7, 37.0 -0.88
A/J f 13.739 2.7234   12 0.78619 0.1982 9.166666667, 17.36666667 0.49
A/J m 15.547 4.3458   12 1.2545 0.2795 5.766666667, 23.83333333 -0.05
B6129SF1/J f 14.467 4.5352   12 1.3092 0.3135 7.4, 25.56666667 0.95
B6129SF1/J m 14.639 3.7118   12 1.0715 0.2536 9.8, 20.93333333 -0.36
B6C3F1/J f 14.636 2.1826   12 0.63007 0.1491 10.5, 17.43333333 1.05
B6C3F1/J m 14.453 3.7673   12 1.0875 0.2607 10.06666667, 22.96666667 -0.42
BALB/cByJ f 14.025 4.7735   12 1.378 0.3404 3.966666667, 20.53333333 0.67
BALB/cByJ m 16.078 6.0026   12 1.7328 0.3733 7.5, 30.06666667 0.13
C3H/HeJ f 10.386 4.0161   12 1.1594 0.3867 3.333333333, 17.96666667 -1.62
C3H/HeJ m 12.675 4.0626   12 1.1728 0.3205 5.766666667, 19.53333333 -1.03
C57BL/6J f 10.494 2.8807   12 0.83158 0.2745 5.666666667, 14.4 -1.55
C57BL/6J m 13.972 3.0458   12 0.87924 0.218 8.933333333, 19.0 -0.59
CBA/J f 11.883 2.9373   12 0.84794 0.2472 5.466666667, 17.26666667 -0.68
CBA/J m 17.289 4.2525   12 1.2276 0.246 9.833333333, 26.4 0.54
DBA/2J f 12.903 3.8569   12 1.1134 0.2989 6.866666667, 19.5 -0.04
DBA/2J m 23.008 14.877   12 4.2946 0.6466 2.933333333, 51.7 2.48
FVB/NJ f 14.394 5.0839   12 1.4676 0.3532 5.166666667, 21.23333333 0.9
FVB/NJ m 16.272 6.8151   12 1.9673 0.4188 4.366666667, 32.36666667 0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 12.6611 1.7429 16.096 9.2262
129S1/SvImJ m 13.1056 1.7429 16.5405 9.6706
A/J f 13.7389 1.7429 17.1738 10.304
A/J m 15.5472 1.7429 18.9821 12.1123
B6129SF1/J f 14.4667 1.7429 17.9016 11.0318
B6129SF1/J m 14.6389 1.7429 18.0738 11.204
B6C3F1/J f 14.6361 1.7429 18.071 11.2012
B6C3F1/J m 14.4528 1.7429 17.8877 11.0179
BALB/cByJ f 14.025 1.7429 17.4599 10.5901
BALB/cByJ m 16.0778 1.7429 19.5127 12.6429
C3H/HeJ f 10.3861 1.7429 13.821 6.9512
C3H/HeJ m 12.675 1.7429 16.1099 9.2401
C57BL/6J f 10.4944 1.7429 13.9294 7.0595
C57BL/6J m 13.9722 1.7429 17.4071 10.5373
CBA/J f 11.8833 1.7429 15.3182 8.4484
CBA/J m 17.2889 1.7429 20.7238 13.854
DBA/2J f 12.9028 1.7429 16.3377 9.4679
DBA/2J m 23.0083 1.7429 26.4432 19.5734
FVB/NJ f 14.3944 1.7429 17.8294 10.9595
FVB/NJ m 16.2722 1.7429 19.7071 12.8373


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 12.8833 1.2324 15.3122 10.4545
A/J both 14.6431 1.2324 17.0719 12.2142
B6129SF1/J both 14.5528 1.2324 16.9816 12.1239
B6C3F1/J both 14.5444 1.2324 16.9733 12.1156
BALB/cByJ both 15.0514 1.2324 17.4802 12.6225
C3H/HeJ both 11.5306 1.2324 13.9594 9.1017
C57BL/6J both 12.2333 1.2324 14.6622 9.8045
CBA/J both 14.5861 1.2324 17.015 12.1573
DBA/2J both 17.9556 1.2324 20.3844 15.5267
FVB/NJ both 15.3333 1.2324 17.7622 12.9045




  GWAS USING LINEAR MIXED MODELS