Project measure / variable:   Bolivar1   stereo_time_pct_d2

ID, description, units MPD:63429   stereo_time_pct_d2   percentage of time spent moving stereotypically, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent moving stereotypically, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means14.866   % 18.837   %
Median of the strain means15.175   % 16.786   %
SD of the strain means± 1.7319 ± 5.1762
Coefficient of variation (CV)0.1165 0.2748
Min–max range of strain means12.267   –   17.119   % 14.647   –   28.439   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 946.4482 946.4482 17.8905 < 0.0001
strain 9 1349.71 149.9678 2.8348 0.0036
sex:strain 9 1867.904 207.5449 3.9232 0.0001
Residuals 220 11638.4841 52.9022


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.742 8.9753   12 2.5909 0.5702 0.9, 38.9 0.51
129S1/SvImJ m 16.961 10.954   12 3.1621 0.6458 6.066666667, 35.6 -0.36
A/J f 12.567 4.0903   12 1.1808 0.3255 4.466666667, 18.36666667 -1.33
A/J m 15.147 3.2204   12 0.92966 0.2126 10.7, 20.2 -0.71
B6129SF1/J f 17.119 6.114   12 1.765 0.3571 10.83333333, 30.3 1.3
B6129SF1/J m 16.611 3.2896   12 0.94963 0.198 10.76666667, 22.0 -0.43
B6C3F1/J f 16.569 2.7056   12 0.78103 0.1633 12.8, 20.66666667 0.98
B6C3F1/J m 17.497 5.2885   12 1.5267 0.3022 9.4, 25.7 -0.26
BALB/cByJ f 15.678 4.8322   12 1.3949 0.3082 8.533333333, 22.9 0.47
BALB/cByJ m 21.058 11.298   12 3.2616 0.5365 12.63333333, 48.76666667 0.43
C3H/HeJ f 13.267 5.7342   12 1.6553 0.4322 6.133333333, 21.5 -0.92
C3H/HeJ m 14.8 5.1065   12 1.4741 0.345 4.6, 22.1 -0.78
C57BL/6J f 14.289 3.3232   12 0.95934 0.2326 8.466666667, 18.9 -0.33
C57BL/6J m 14.647 2.8043   12 0.80952 0.1915 11.66666667, 20.56666667 -0.81
CBA/J f 12.267 2.9556   12 0.85321 0.2409 7.9, 17.43333333 -1.5
CBA/J m 28.439 13.944   12 4.0254 0.4903 11.73333333, 47.06666667 1.86
DBA/2J f 14.672 5.5886   12 1.6133 0.3809 7.8, 25.16666667 -0.11
DBA/2J m 27.561 15.2   12 4.3877 0.5515 3.933333333, 51.26666667 1.69
FVB/NJ f 16.486 5.619   12 1.6221 0.3408 6.533333333, 24.2 0.94
FVB/NJ m 15.65 4.5853   12 1.3237 0.293 4.166666667, 21.8 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.7417 2.0996 19.8797 11.6037
129S1/SvImJ m 16.9611 2.0996 21.0991 12.8231
A/J f 12.5667 2.0996 16.7047 8.4287
A/J m 15.1472 2.0996 19.2852 11.0092
B6129SF1/J f 17.1194 2.0996 21.2574 12.9814
B6129SF1/J m 16.6111 2.0996 20.7491 12.4731
B6C3F1/J f 16.5694 2.0996 20.7074 12.4314
B6C3F1/J m 17.4972 2.0996 21.6352 13.3592
BALB/cByJ f 15.6778 2.0996 19.8158 11.5398
BALB/cByJ m 21.0583 2.0996 25.1963 16.9203
C3H/HeJ f 13.2667 2.0996 17.4047 9.1287
C3H/HeJ m 14.8 2.0996 18.938 10.662
C57BL/6J f 14.2889 2.0996 18.4269 10.1509
C57BL/6J m 14.6472 2.0996 18.7852 10.5092
CBA/J f 12.2667 2.0996 16.4047 8.1287
CBA/J m 28.4389 2.0996 32.5769 24.3009
DBA/2J f 14.6722 2.0996 18.8102 10.5342
DBA/2J m 27.5611 2.0996 31.6991 23.4231
FVB/NJ f 16.4861 2.0996 20.6241 12.3481
FVB/NJ m 15.65 2.0996 19.788 11.512


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.3514 1.4847 19.2774 13.4254
A/J both 13.8569 1.4847 16.7829 10.9309
B6129SF1/J both 16.8653 1.4847 19.7913 13.9393
B6C3F1/J both 17.0333 1.4847 19.9593 14.1073
BALB/cByJ both 18.3681 1.4847 21.2941 15.4421
C3H/HeJ both 14.0333 1.4847 16.9593 11.1073
C57BL/6J both 14.4681 1.4847 17.3941 11.5421
CBA/J both 20.3528 1.4847 23.2788 17.4268
DBA/2J both 21.1167 1.4847 24.0427 18.1907
FVB/NJ both 16.0681 1.4847 18.9941 13.1421




  GWAS USING LINEAR MIXED MODELS