Project measure / variable:   Bolivar1   stereo_bouts_d2

ID, description, units MPD:63426   stereo_bouts_d2   number of stereotypic movement episodes, 5 min test in dark   [n]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of stereotypic movement episodes, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means41.525   n 44.008   n
Median of the strain means41.334   n 44.291   n
SD of the strain means± 1.3386 ± 4.4414
Coefficient of variation (CV)0.0322 0.1009
Min–max range of strain means40.167   –   44.667   n 36.25   –   50.0   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 370.0167 370.0167 7.8552 0.0055
strain 9 1338.6833 148.7426 3.1577 0.0013
sex:strain 9 985.2333 109.4704 2.324 0.0162
Residuals 220 10363.0 47.1045


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 41.417 10.175   12 2.9374 0.2457 16.0, 54.0 -0.08
129S1/SvImJ m 36.25 6.312   12 1.8221 0.1741 27.0, 46.0 -1.75
A/J f 40.25 7.4239   12 2.1431 0.1844 29.0, 55.0 -0.95
A/J m 43.083 3.9877   12 1.1511 0.0926 39.0, 51.0 -0.21
B6129SF1/J f 41.083 7.1154   12 2.054 0.1732 25.0, 48.0 -0.33
B6129SF1/J m 46.0 5.2915   12 1.5275 0.115 35.0, 56.0 0.45
B6C3F1/J f 44.667 3.2567   12 0.94013 0.0729 39.0, 51.0 2.35
B6C3F1/J m 47.167 5.3058   12 1.5317 0.1125 38.0, 56.0 0.71
BALB/cByJ f 41.917 7.2671   12 2.0978 0.1734 30.0, 50.0 0.29
BALB/cByJ m 50.0 3.8847   12 1.1214 0.0777 42.0, 56.0 1.35
C3H/HeJ f 40.167 11.069   12 3.1952 0.2756 20.0, 54.0 -1.01
C3H/HeJ m 41.583 7.2921   12 2.105 0.1754 29.0, 50.0 -0.55
C57BL/6J f 40.25 5.3619   12 1.5478 0.1332 31.0, 46.0 -0.95
C57BL/6J m 42.417 2.9375   12 0.84798 0.0693 38.0, 50.0 -0.36
CBA/J f 41.25 5.6105   12 1.6196 0.136 34.0, 51.0 -0.21
CBA/J m 49.333 4.5193   12 1.3046 0.0916 43.0, 58.0 1.2
DBA/2J f 42.167 7.2967   12 2.1064 0.173 30.0, 50.0 0.48
DBA/2J m 38.75 11.986   12 3.46 0.3093 19.0, 50.0 -1.18
FVB/NJ f 42.083 4.8516   12 1.4005 0.1153 32.0, 50.0 0.42
FVB/NJ m 45.5 7.5498   12 2.1794 0.1659 24.0, 52.0 0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 41.4167 1.9813 45.3213 37.512
129S1/SvImJ m 36.25 1.9813 40.1547 32.3453
A/J f 40.25 1.9813 44.1547 36.3453
A/J m 43.0833 1.9813 46.988 39.1787
B6129SF1/J f 41.0833 1.9813 44.988 37.1787
B6129SF1/J m 46.0 1.9813 49.9047 42.0953
B6C3F1/J f 44.6667 1.9813 48.5713 40.762
B6C3F1/J m 47.1667 1.9813 51.0713 43.262
BALB/cByJ f 41.9167 1.9813 45.8213 38.012
BALB/cByJ m 50.0 1.9813 53.9047 46.0953
C3H/HeJ f 40.1667 1.9813 44.0713 36.262
C3H/HeJ m 41.5833 1.9813 45.488 37.6787
C57BL/6J f 40.25 1.9813 44.1547 36.3453
C57BL/6J m 42.4167 1.9813 46.3213 38.512
CBA/J f 41.25 1.9813 45.1547 37.3453
CBA/J m 49.3333 1.9813 53.238 45.4287
DBA/2J f 42.1667 1.9813 46.0713 38.262
DBA/2J m 38.75 1.9813 42.6547 34.8453
FVB/NJ f 42.0833 1.9813 45.988 38.1787
FVB/NJ m 45.5 1.9813 49.4047 41.5953


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 38.8333 1.401 41.5944 36.0723
A/J both 41.6667 1.401 44.4277 38.9056
B6129SF1/J both 43.5417 1.401 46.3027 40.7806
B6C3F1/J both 45.9167 1.401 48.6777 43.1556
BALB/cByJ both 45.9583 1.401 48.7194 43.1973
C3H/HeJ both 40.875 1.401 43.636 38.114
C57BL/6J both 41.3333 1.401 44.0944 38.5723
CBA/J both 45.2917 1.401 48.0527 42.5306
DBA/2J both 40.4583 1.401 43.2194 37.6973
FVB/NJ both 43.7917 1.401 46.5527 41.0306




  GWAS USING LINEAR MIXED MODELS