Project measure / variable:   Bolivar1   stereo_bouts_d1

ID, description, units MPD:63425   stereo_bouts_d1   number of stereotypic movement episodes, 5 min test in dark   [n]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of stereotypic movement episodes, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means46.375   n 46.517   n
Median of the strain means46.5   n 47.0   n
SD of the strain means± 1.7039 ± 3.6948
Coefficient of variation (CV)0.0367 0.0794
Min–max range of strain means42.25   –   48.167   n 40.167   –   52.67   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.2042 1.2042 0.0352 0.8513
strain 9 1012.8375 112.5375 3.2903 0.0009
sex:strain 9 774.6708 86.0745 2.5166 0.0092
Residuals 220 7524.5833 34.2027


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 45.5 4.4823   12 1.2939 0.0985 37.0, 51.0 -0.51
129S1/SvImJ m 40.167 8.9222   12 2.5756 0.2221 24.0, 52.0 -1.72
A/J f 42.25 8.8639   12 2.5588 0.2098 25.0, 56.0 -2.42
A/J m 44.583 5.1427   12 1.4846 0.1153 37.0, 53.0 -0.52
B6129SF1/J f 46.0 7.2739   12 2.0998 0.1581 29.0, 56.0 -0.22
B6129SF1/J m 48.333 3.8218   12 1.1033 0.0791 40.0, 55.0 0.49
B6C3F1/J f 48.0 6.5505   12 1.891 0.1365 39.0, 59.0 0.95
B6C3F1/J m 46.75 5.7386   12 1.6566 0.1228 39.0, 61.0 0.06
BALB/cByJ f 46.583 5.5343   12 1.5976 0.1188 34.0, 52.0 0.12
BALB/cByJ m 49.667 5.8205   12 1.6802 0.1172 43.0, 60.0 0.85
C3H/HeJ f 47.417 5.1072   12 1.4743 0.1077 41.0, 56.0 0.61
C3H/HeJ m 46.833 6.8468   12 1.9765 0.1462 35.0, 55.0 0.09
C57BL/6J f 46.0 4.729   12 1.3652 0.1028 38.0, 53.0 -0.22
C57BL/6J m 47.583 5.0894   12 1.4692 0.107 42.0, 60.0 0.29
CBA/J f 46.417 4.4407   12 1.2819 0.0957 39.0, 54.0 0.02
CBA/J m 52.67 2.6742   12 0.77198 0.0508 46.0, 56.0 1.67
DBA/2J f 47.417 3.5022   12 1.011 0.0739 40.0, 52.0 0.61
DBA/2J m 41.417 7.833   12 2.2612 0.1891 27.0, 53.0 -1.38
FVB/NJ f 48.167 4.2176   12 1.2175 0.0876 42.0, 56.0 1.05
FVB/NJ m 47.167 5.6542   12 1.6322 0.1199 37.0, 55.0 0.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 45.5 1.6883 48.8272 42.1728
129S1/SvImJ m 40.1667 1.6883 43.4939 36.8394
A/J f 42.25 1.6883 45.5772 38.9228
A/J m 44.5833 1.6883 47.9106 41.2561
B6129SF1/J f 46.0 1.6883 49.3272 42.6728
B6129SF1/J m 48.3333 1.6883 51.6606 45.0061
B6C3F1/J f 48.0 1.6883 51.3272 44.6728
B6C3F1/J m 46.75 1.6883 50.0772 43.4228
BALB/cByJ f 46.5833 1.6883 49.9106 43.2561
BALB/cByJ m 49.6667 1.6883 52.9939 46.3394
C3H/HeJ f 47.4167 1.6883 50.7439 44.0894
C3H/HeJ m 46.8333 1.6883 50.1606 43.5061
C57BL/6J f 46.0 1.6883 49.3272 42.6728
C57BL/6J m 47.5833 1.6883 50.9106 44.2561
CBA/J f 46.4167 1.6883 49.7439 43.0894
CBA/J m 52.6667 1.6883 55.9939 49.3394
DBA/2J f 47.4167 1.6883 50.7439 44.0894
DBA/2J m 41.4167 1.6883 44.7439 38.0894
FVB/NJ f 48.1667 1.6883 51.4939 44.8394
FVB/NJ m 47.1667 1.6883 50.4939 43.8394


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 42.8333 1.1938 45.186 40.4806
A/J both 43.4167 1.1938 45.7694 41.064
B6129SF1/J both 47.1667 1.1938 49.5194 44.814
B6C3F1/J both 47.375 1.1938 49.7277 45.0223
BALB/cByJ both 48.125 1.1938 50.4777 45.7723
C3H/HeJ both 47.125 1.1938 49.4777 44.7723
C57BL/6J both 46.7917 1.1938 49.1444 44.439
CBA/J both 49.5417 1.1938 51.8944 47.189
DBA/2J both 44.4167 1.1938 46.7694 42.064
FVB/NJ both 47.6667 1.1938 50.0194 45.314




  GWAS USING LINEAR MIXED MODELS