Project measure / variable:   Bolivar1   stereo_act_d3

ID, description, units MPD:63424   stereo_act_d3   stereotypic activity (beam breaks), 5 min test in dark   [n]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - stereotypic activity (beam breaks), 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means412.1   n 520.3   n
Median of the strain means420.9   n 495.2   n
SD of the strain means± 63.39 ± 121.7
Coefficient of variation (CV)0.1538 0.2339
Min–max range of strain means317.0   –   502.8   n 350.2   –   706.2   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 702218.0167 702218.0167 15.2821 0.0001
strain 9 1522745.0 169193.8889 3.6821 0.0003
sex:strain 9 510232.0667 56692.4519 1.2338 0.2754
Residuals 220 10109064.5 45950.2932


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 420.7 266.7   12 76.98 0.6339 81.0, 887.0 0.14
129S1/SvImJ m 350.2 325.3   12 93.9 0.9288 35.0, 1090.0 -1.4
A/J f 371.2 110.3   12 31.836 0.2971 221.0, 604.0 -0.65
A/J m 487.2 203.7   12 58.79 0.418 192.0, 947.0 -0.27
B6129SF1/J f 421.0 150.2   12 43.368 0.3568 177.0, 772.0 0.14
B6129SF1/J m 467.4 169.5   12 48.936 0.3627 242.0, 726.0 -0.43
B6C3F1/J f 473.1 134.5   12 38.839 0.2844 270.0, 706.0 0.96
B6C3F1/J m 503.2 139.5   12 40.258 0.2771 210.0, 750.0 -0.14
BALB/cByJ f 479.2 196.5   12 56.71 0.41 156.0, 825.0 1.06
BALB/cByJ m 627.7 290.9   12 83.98 0.4635 305.0, 1256.0 0.88
C3H/HeJ f 317.0 113.6   12 32.787 0.3583 117.0, 534.0 -1.5
C3H/HeJ m 457.5 134.5   12 38.821 0.2939 213.0, 699.0 -0.52
C57BL/6J f 341.5 105.2   12 30.363 0.308 185.0, 534.0 -1.11
C57BL/6J m 384.2 95.27   12 27.502 0.2479 216.0, 570.0 -1.12
CBA/J f 356.0 133.9   12 38.658 0.3762 118.0, 636.0 -0.89
CBA/J m 521.1 119.1   12 34.394 0.2286 285.0, 694.0 0.01
DBA/2J f 502.8 161.2   12 46.548 0.3207 232.0, 833.0 1.43
DBA/2J m 698.1 502.5   12 145.1 0.7199 74.0, 1855.0 1.46
FVB/NJ f 438.7 166.8   12 48.149 0.3802 122.0, 646.0 0.42
FVB/NJ m 706.2 294.5   12 85.03 0.417 187.0, 1399.0 1.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 420.6667 61.8805 542.621 298.7123
129S1/SvImJ m 350.25 61.8805 472.2044 228.2956
A/J f 371.25 61.8805 493.2044 249.2956
A/J m 487.25 61.8805 609.2044 365.2956
B6129SF1/J f 421.0 61.8805 542.9544 299.0456
B6129SF1/J m 467.4167 61.8805 589.371 345.4623
B6C3F1/J f 473.0833 61.8805 595.0377 351.129
B6C3F1/J m 503.25 61.8805 625.2044 381.2956
BALB/cByJ f 479.1667 61.8805 601.121 357.2123
BALB/cByJ m 627.6667 61.8805 749.621 505.7123
C3H/HeJ f 317.0 61.8805 438.9544 195.0456
C3H/HeJ m 457.5 61.8805 579.4544 335.5456
C57BL/6J f 341.5 61.8805 463.4544 219.5456
C57BL/6J m 384.25 61.8805 506.2044 262.2956
CBA/J f 356.0 61.8805 477.9544 234.0456
CBA/J m 521.0833 61.8805 643.0377 399.129
DBA/2J f 502.8333 61.8805 624.7877 380.879
DBA/2J m 698.0833 61.8805 820.0377 576.129
FVB/NJ f 438.6667 61.8805 560.621 316.7123
FVB/NJ m 706.25 61.8805 828.2044 584.2956


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 385.4583 43.7561 471.6931 299.2236
A/J both 429.25 43.7561 515.4847 343.0153
B6129SF1/J both 444.2083 43.7561 530.4431 357.9736
B6C3F1/J both 488.1667 43.7561 574.4014 401.9319
BALB/cByJ both 553.4167 43.7561 639.6514 467.1819
C3H/HeJ both 387.25 43.7561 473.4847 301.0153
C57BL/6J both 362.875 43.7561 449.1097 276.6403
CBA/J both 438.5417 43.7561 524.7764 352.3069
DBA/2J both 600.4583 43.7561 686.6931 514.2236
FVB/NJ both 572.4583 43.7561 658.6931 486.2236




  GWAS USING LINEAR MIXED MODELS