Project measure / variable:   Bolivar1   stereo_act_d2

ID, description, units MPD:63423   stereo_act_d2   stereotypic activity (beam breaks), 5 min test in dark   [n]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - stereotypic activity (beam breaks), 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means478.3   n 619.1   n
Median of the strain means486.4   n 597.1   n
SD of the strain means± 78.72 ± 173.2
Coefficient of variation (CV)0.1646 0.2798
Min–max range of strain means368.1   –   567.2   n 382.3   –   884.2   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1189619.2042 1189619.2042 20.3845 < 0.0001
strain 9 2170505.1708 241167.2412 4.1325 0.0001
sex:strain 9 1737926.1708 193102.9079 3.3089 0.0008
Residuals 220 12838993.75 58359.0625


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 559.5 274.9   12 79.36 0.4913 56.0, 1005.0 1.03
129S1/SvImJ m 463.6 316.8   12 91.46 0.6834 153.0, 1060.0 -0.9
A/J f 374.0 129.9   12 37.488 0.3472 195.0, 624.0 -1.32
A/J m 382.3 122.9   12 35.473 0.3214 264.0, 705.0 -1.37
B6129SF1/J f 537.5 170.8   12 49.307 0.3178 282.0, 924.0 0.75
B6129SF1/J m 575.8 173.8   12 50.16 0.3018 310.0, 890.0 -0.25
B6C3F1/J f 567.2 123.3   12 35.603 0.2174 422.0, 758.0 1.13
B6C3F1/J m 618.5 202.8   12 58.56 0.328 322.0, 985.0 0.0
BALB/cByJ f 501.8 203.7   12 58.8 0.4059 203.0, 770.0 0.3
BALB/cByJ m 810.1 354.5   12 102.3 0.4376 538.0, 1573.0 1.1
C3H/HeJ f 418.5 180.6   12 52.13 0.4315 151.0, 726.0 -0.76
C3H/HeJ m 502.7 183.0   12 52.84 0.3642 188.0, 787.0 -0.67
C57BL/6J f 421.3 115.3   12 33.282 0.2736 256.0, 613.0 -0.72
C57BL/6J m 473.8 71.98   12 20.778 0.1519 374.0, 590.0 -0.84
CBA/J f 368.1 105.3   12 30.4 0.2861 244.0, 597.0 -1.4
CBA/J m 884.2 489.6   12 141.3 0.5537 366.0, 1662.0 1.53
DBA/2J f 563.8 211.1   12 60.95 0.3745 276.0, 979.0 1.09
DBA/2J m 832.7 470.6   12 135.8 0.5651 135.0, 1487.0 1.23
FVB/NJ f 470.9 167.6   12 48.376 0.3559 186.0, 709.0 -0.09
FVB/NJ m 647.2 216.6   12 62.54 0.3347 169.0, 1012.0 0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 559.5 69.737 696.9382 422.0618
129S1/SvImJ m 463.5833 69.737 601.0215 326.1452
A/J f 374.0 69.737 511.4382 236.5618
A/J m 382.3333 69.737 519.7715 244.8952
B6129SF1/J f 537.5 69.737 674.9382 400.0618
B6129SF1/J m 575.75 69.737 713.1882 438.3118
B6C3F1/J f 567.25 69.737 704.6882 429.8118
B6C3F1/J m 618.5 69.737 755.9382 481.0618
BALB/cByJ f 501.8333 69.737 639.2715 364.3952
BALB/cByJ m 810.0833 69.737 947.5215 672.6452
C3H/HeJ f 418.5 69.737 555.9382 281.0618
C3H/HeJ m 502.6667 69.737 640.1048 365.2285
C57BL/6J f 421.3333 69.737 558.7715 283.8952
C57BL/6J m 473.8333 69.737 611.2715 336.3952
CBA/J f 368.0833 69.737 505.5215 230.6452
CBA/J m 884.1667 69.737 1021.6048 746.7285
DBA/2J f 563.8333 69.737 701.2715 426.3952
DBA/2J m 832.6667 69.737 970.1048 695.2285
FVB/NJ f 470.9167 69.737 608.3548 333.4785
FVB/NJ m 647.25 69.737 784.6882 509.8118


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 511.5417 49.3115 608.7251 414.3582
A/J both 378.1667 49.3115 475.3501 280.9832
B6129SF1/J both 556.625 49.3115 653.8085 459.4415
B6C3F1/J both 592.875 49.3115 690.0585 495.6915
BALB/cByJ both 655.9583 49.3115 753.1418 558.7749
C3H/HeJ both 460.5833 49.3115 557.7668 363.3999
C57BL/6J both 447.5833 49.3115 544.7668 350.3999
CBA/J both 626.125 49.3115 723.3085 528.9415
DBA/2J both 698.25 49.3115 795.4335 601.0665
FVB/NJ both 559.0833 49.3115 656.2668 461.8999




  GWAS USING LINEAR MIXED MODELS