Project measure / variable:   Bolivar1   stereo_act_d1

ID, description, units MPD:63422   stereo_act_d1   stereotypic activity (beam breaks), 5 min test in dark   [n]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - stereotypic activity (beam breaks), 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means616.6   n 697.5   n
Median of the strain means614.0   n 736.1   n
SD of the strain means± 100.3 ± 137.6
Coefficient of variation (CV)0.1627 0.1973
Min–max range of strain means480.9   –   825.4   n 370.8   –   855.8   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 391960.8375 391960.8375 8.375 0.0042
strain 9 2311520.8375 256835.6486 5.4878 < 0.0001
sex:strain 9 821080.7042 91231.1894 1.9493 0.0465
Residuals 220 10296285.9167 46801.2996


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 685.1 309.1   12 89.22 0.4512 236.0, 1174.0 0.68
129S1/SvImJ m 589.3 354.6   12 102.4 0.6017 109.0, 1309.0 -0.79
A/J f 480.9 276.6   12 79.85 0.5751 130.0, 1056.0 -1.35
A/J m 370.8 82.7   12 23.874 0.2231 209.0, 444.0 -2.37
B6129SF1/J f 825.4 160.9   12 46.453 0.195 598.0, 1153.0 2.08
B6129SF1/J m 771.7 200.9   12 57.98 0.2603 412.0, 1153.0 0.54
B6C3F1/J f 650.3 90.9   12 26.24 0.1398 446.0, 775.0 0.34
B6C3F1/J m 732.9 156.8   12 45.268 0.214 499.0, 949.0 0.26
BALB/cByJ f 657.9 195.3   12 56.38 0.2969 309.0, 950.0 0.41
BALB/cByJ m 855.8 170.9   12 49.345 0.1997 573.0, 1101.0 1.15
C3H/HeJ f 587.0 171.2   12 49.432 0.2917 317.0, 839.0 -0.3
C3H/HeJ m 796.9 273.9   12 79.06 0.3437 423.0, 1277.0 0.72
C57BL/6J f 587.2 137.7   12 39.761 0.2345 398.0, 876.0 -0.29
C57BL/6J m 679.2 162.4   12 46.884 0.2391 485.0, 978.0 -0.13
CBA/J f 492.3 114.8   12 33.143 0.2332 315.0, 757.0 -1.24
CBA/J m 659.2 84.65   12 24.435 0.1284 519.0, 805.0 -0.28
DBA/2J f 640.8 175.2   12 50.57 0.2734 445.0, 1050.0 0.24
DBA/2J m 779.7 468.8   12 135.3 0.6012 157.0, 1725.0 0.6
FVB/NJ f 559.3 138.4   12 39.95 0.2474 357.0, 808.0 -0.57
FVB/NJ m 739.3 159.2   12 45.956 0.2153 375.0, 947.0 0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 685.0833 62.4508 808.1618 562.0049
129S1/SvImJ m 589.3333 62.4508 712.4118 466.2549
A/J f 480.9167 62.4508 603.9951 357.8382
A/J m 370.75 62.4508 493.8285 247.6715
B6129SF1/J f 825.4167 62.4508 948.4951 702.3382
B6129SF1/J m 771.6667 62.4508 894.7451 648.5882
B6C3F1/J f 650.3333 62.4508 773.4118 527.2549
B6C3F1/J m 732.9167 62.4508 855.9951 609.8382
BALB/cByJ f 657.9167 62.4508 780.9951 534.8382
BALB/cByJ m 855.75 62.4508 978.8285 732.6715
C3H/HeJ f 587.0 62.4508 710.0785 463.9215
C3H/HeJ m 796.9167 62.4508 919.9951 673.8382
C57BL/6J f 587.25 62.4508 710.3285 464.1715
C57BL/6J m 679.1667 62.4508 802.2451 556.0882
CBA/J f 492.3333 62.4508 615.4118 369.2549
CBA/J m 659.1667 62.4508 782.2451 536.0882
DBA/2J f 640.8333 62.4508 763.9118 517.7549
DBA/2J m 779.6667 62.4508 902.7451 656.5882
FVB/NJ f 559.3333 62.4508 682.4118 436.2549
FVB/NJ m 739.3333 62.4508 862.4118 616.2549


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 637.2083 44.1594 724.238 550.1787
A/J both 425.8333 44.1594 512.863 338.8037
B6129SF1/J both 798.5417 44.1594 885.5713 711.512
B6C3F1/J both 691.625 44.1594 778.6546 604.5954
BALB/cByJ both 756.8333 44.1594 843.863 669.8037
C3H/HeJ both 691.9583 44.1594 778.988 604.9287
C57BL/6J both 633.2083 44.1594 720.238 546.1787
CBA/J both 575.75 44.1594 662.7796 488.7204
DBA/2J both 710.25 44.1594 797.2796 623.2204
FVB/NJ both 649.3333 44.1594 736.363 562.3037




  GWAS USING LINEAR MIXED MODELS