Project measure / variable:   Bolivar1   vert_time_pct_d3

ID, description, units MPD:63421   vert_time_pct_d3   percentage of time spent vertical, 5 min test in dark   [%]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Bolivar1 - percentage of time spent vertical, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means4.8822   % 5.6853   %
Median of the strain means4.6555   % 4.6708   %
SD of the strain means± 2.2128 ± 5.432
Coefficient of variation (CV)0.4532 0.9554
Min–max range of strain means2.1389   –   9.7222   % 0.075   –   19.267   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 38.6939 38.6939 1.9666 0.1622
strain 9 1849.7069 205.523 10.4457 < 0.0001
sex:strain 9 1865.6524 207.2947 10.5358 < 0.0001
Residuals 220 4328.5623 19.6753


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.125 4.0114   12 1.158 0.9725 -0.34
129S1/SvImJ m 0.70833 2.4537   12 0.70833 3.4641 -0.92
A/J f 2.1389 2.4569   12 0.70923 1.1487 -1.24
A/J m 2.6611 3.6772   12 1.0615 1.3818 0.066666667, 10.16666667 -0.56
B6129SF1/J f 2.2028 2.7683   12 0.79913 1.2567 -1.21
B6129SF1/J m 7.2222 3.6212   12 1.0454 0.5014 0.9, 12.86666667 0.28
B6C3F1/J f 5.6361 2.4253   12 0.70014 0.4303 0.466666667, 8.966666667 0.34
B6C3F1/J m 7.8056 3.8501   12 1.1114 0.4933 1.3, 13.66666667 0.39
BALB/cByJ f 5.9 6.4962   12 1.8753 1.1011 0.333333333, 18.06666667 0.46
BALB/cByJ m 4.9139 3.312   12 0.9561 0.674 0.133333333, 11.16666667 -0.14
C3H/HeJ f 3.6222 2.0288   12 0.58568 0.5601 -0.57
C3H/HeJ m 6.5278 2.6046   12 0.75188 0.399 1.8, 12.1 0.16
C57BL/6J f 5.1167 1.9154   12 0.55293 0.3743 2.433333333, 9.033333333 0.11
C57BL/6J m 4.4278 2.5111   12 0.7249 0.5671 2.133333333, 10.56666667 -0.23
CBA/J f 4.1944 8.1441   12 2.351 1.9416 0.1, 21.76666667 -0.31
CBA/J m 3.2444 2.3447   12 0.67685 0.7227 -0.45
DBA/2J f 9.7222 8.218   12 2.3723 0.8453 0.133333333, 21.73333333 2.19
DBA/2J m 0.075 0.23958   12 0.06916 3.1944 -1.03
FVB/NJ f 6.1639 6.3727   12 1.8396 1.0339 0.58
FVB/NJ m 19.267 7.5021   12 2.1657 0.3894 3.5, 32.43333333 2.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.125 1.2805 6.6486 1.6014
129S1/SvImJ m 0.7083 1.2805 3.2319 -1.8152
A/J f 2.1389 1.2805 4.6624 -0.3847
A/J m 2.6611 1.2805 5.1847 0.1376
B6129SF1/J f 2.2028 1.2805 4.7263 -0.3208
B6129SF1/J m 7.2222 1.2805 9.7458 4.6987
B6C3F1/J f 5.6361 1.2805 8.1597 3.1126
B6C3F1/J m 7.8056 1.2805 10.3291 5.282
BALB/cByJ f 5.9 1.2805 8.4236 3.3764
BALB/cByJ m 4.9139 1.2805 7.4374 2.3903
C3H/HeJ f 3.6222 1.2805 6.1458 1.0987
C3H/HeJ m 6.5278 1.2805 9.0513 4.0042
C57BL/6J f 5.1167 1.2805 7.6402 2.5931
C57BL/6J m 4.4278 1.2805 6.9513 1.9042
CBA/J f 4.1944 1.2805 6.718 1.6709
CBA/J m 3.2444 1.2805 5.768 0.7209
DBA/2J f 9.7222 1.2805 12.2458 7.1987
DBA/2J m 0.075 1.2805 2.5986 -2.4486
FVB/NJ f 6.1639 1.2805 8.6874 3.6403
FVB/NJ m 19.2667 1.2805 21.7902 16.7431


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.4167 0.9054 4.2011 0.6322
A/J both 2.4 0.9054 4.1844 0.6156
B6129SF1/J both 4.7125 0.9054 6.4969 2.9281
B6C3F1/J both 6.7208 0.9054 8.5053 4.9364
BALB/cByJ both 5.4069 0.9054 7.1914 3.6225
C3H/HeJ both 5.075 0.9054 6.8594 3.2906
C57BL/6J both 4.7722 0.9054 6.5566 2.9878
CBA/J both 3.7194 0.9054 5.5039 1.935
DBA/2J both 4.8986 0.9054 6.683 3.1142
FVB/NJ both 12.7153 0.9054 14.4997 10.9309




  GWAS USING LINEAR MIXED MODELS