Project measure / variable:   Bolivar1   vert_time_pct_d2

ID, description, units MPD:63420   vert_time_pct_d2   percentage of time spent vertical, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent vertical, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means5.5172   % 6.4539   %
Median of the strain means5.4986   % 6.2347   %
SD of the strain means± 2.4851 ± 6.0222
Coefficient of variation (CV)0.4504 0.9331
Min–max range of strain means1.4889   –   9.9833   % 0.13333   –   21.322   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 52.6407 52.6407 2.6211 0.1069
strain 9 2124.1584 236.0176 11.752 < 0.0001
sex:strain 9 2459.6804 273.2978 13.6082 < 0.0001
Residuals 220 4418.315 20.0832


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.8556 5.6197   12 1.6223 0.9597 0.14
129S1/SvImJ m 1.1028 3.664   12 1.0577 3.3225 -0.89
A/J f 1.4889 1.8109   12 0.52275 1.2163 -1.62
A/J m 1.9556 2.7203   12 0.78527 1.391 -0.75
B6129SF1/J f 2.7806 3.1671   12 0.91426 1.139 -1.1
B6129SF1/J m 8.5778 3.2015   12 0.9242 0.3732 2.366666667, 13.36666667 0.35
B6C3F1/J f 8.45 3.7513   12 1.0829 0.4439 1.233333333, 13.43333333 1.18
B6C3F1/J m 8.4167 2.7149   12 0.78372 0.3226 4.566666667, 12.93333333 0.33
BALB/cByJ f 6.1972 6.2348   12 1.7998 1.0061 0.4, 18.6 0.27
BALB/cByJ m 6.0611 4.0269   12 1.1625 0.6644 0.2, 15.03333333 -0.07
C3H/HeJ f 5.1139 2.5121   12 0.72519 0.4912 -0.16
C3H/HeJ m 6.9 2.1666   12 0.62543 0.314 4.033333333, 10.76666667 0.07
C57BL/6J f 6.0944 1.9546   12 0.56425 0.3207 3.466666667, 9.933333333 0.23
C57BL/6J m 6.4083 3.1445   12 0.90775 0.4907 2.4, 13.6 -0.01
CBA/J f 4.0667 7.8076   12 2.2538 1.9199 -0.58
CBA/J m 3.6611 2.4603   12 0.71022 0.672 0.066666667, 7.066666667 -0.46
DBA/2J f 9.9833 8.3952   12 2.4235 0.8409 1.8
DBA/2J m 0.13333 0.29025   12 0.08379 2.1768 -1.05
FVB/NJ f 5.1417 5.8203   12 1.6802 1.132 -0.15
FVB/NJ m 21.322 7.2805   12 2.1017 0.3415 1.533333333, 29.7 2.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.8556 1.2937 8.4051 3.306
129S1/SvImJ m 1.1028 1.2937 3.6524 -1.4468
A/J f 1.4889 1.2937 4.0385 -1.0607
A/J m 1.9556 1.2937 4.5051 -0.594
B6129SF1/J f 2.7806 1.2937 5.3301 0.231
B6129SF1/J m 8.5778 1.2937 11.1274 6.0282
B6C3F1/J f 8.45 1.2937 10.9996 5.9004
B6C3F1/J m 8.4167 1.2937 10.9663 5.8671
BALB/cByJ f 6.1972 1.2937 8.7468 3.6476
BALB/cByJ m 6.0611 1.2937 8.6107 3.5115
C3H/HeJ f 5.1139 1.2937 7.6635 2.5643
C3H/HeJ m 6.9 1.2937 9.4496 4.3504
C57BL/6J f 6.0944 1.2937 8.644 3.5449
C57BL/6J m 6.4083 1.2937 8.9579 3.8587
CBA/J f 4.0667 1.2937 6.6163 1.5171
CBA/J m 3.6611 1.2937 6.2107 1.1115
DBA/2J f 9.9833 1.2937 12.5329 7.4337
DBA/2J m 0.1333 1.2937 2.6829 -2.4163
FVB/NJ f 5.1417 1.2937 7.6913 2.5921
FVB/NJ m 21.3222 1.2937 23.8718 18.7726


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.4792 0.9148 5.282 1.6763
A/J both 1.7222 0.9148 3.5251 -0.0806
B6129SF1/J both 5.6792 0.9148 7.482 3.8763
B6C3F1/J both 8.4333 0.9148 10.2362 6.6305
BALB/cByJ both 6.1292 0.9148 7.932 4.3263
C3H/HeJ both 6.0069 0.9148 7.8098 4.2041
C57BL/6J both 6.2514 0.9148 8.0542 4.4486
CBA/J both 3.8639 0.9148 5.6667 2.0611
DBA/2J both 5.0583 0.9148 6.8612 3.2555
FVB/NJ both 13.2319 0.9148 15.0348 11.4291




  GWAS USING LINEAR MIXED MODELS