Project measure / variable:   Bolivar1   vert_time_pct_d1

ID, description, units MPD:63419   vert_time_pct_d1   percentage of time spent vertical, 5 min test in dark   [%]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent vertical, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means6.8255   % 7.2653   %
Median of the strain means6.2667   % 7.5834   %
SD of the strain means± 2.3685 ± 5.7716
Coefficient of variation (CV)0.347 0.7944
Min–max range of strain means3.6361   –   11.808   % 0.375   –   20.081   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 11.6013 11.6013 0.6156 0.4335
strain 9 1979.7168 219.9685 11.6716 < 0.0001
sex:strain 9 2223.6823 247.0758 13.11 < 0.0001
Residuals 220 4146.2101 18.8464


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.9722 5.1525   12 1.4874 0.8627 0.033333333, 14.26666667 -0.36
129S1/SvImJ m 1.6222 3.6019   12 1.0398 2.2203 -0.98
A/J f 3.6361 3.1873   12 0.92009 0.8766 -1.35
A/J m 1.6556 2.2621   12 0.65302 1.3664 -0.97
B6129SF1/J f 4.8944 4.02   12 1.1605 0.8213 -0.82
B6129SF1/J m 9.9778 3.0842   12 0.89032 0.3091 4.9, 15.93333333 0.47
B6C3F1/J f 8.8944 2.1973   12 0.63431 0.247 4.966666667, 12.3 0.87
B6C3F1/J m 10.739 2.727   12 0.78721 0.2539 5.766666667, 15.83333333 0.6
BALB/cByJ f 8.55 7.2489   12 2.0926 0.8478 0.466666667, 25.43333333 0.73
BALB/cByJ m 7.525 3.9362   12 1.1363 0.5231 3.033333333, 16.8 0.04
C3H/HeJ f 6.0361 2.6069   12 0.75254 0.4319 1.066666667, 10.83333333 -0.33
C3H/HeJ m 7.9361 2.1017   12 0.60672 0.2648 4.633333333, 11.83333333 0.12
C57BL/6J f 6.8861 2.6445   12 0.76339 0.384 4.533333333, 13.33333333 0.03
C57BL/6J m 7.6417 2.3085   12 0.6664 0.3021 5.366666667, 12.66666667 0.07
CBA/J f 5.0806 6.3395   12 1.83 1.2478 0.333333333, 21.26666667 -0.74
CBA/J m 5.1 2.5344   12 0.73162 0.4969 0.9, 10.63333333 -0.38
DBA/2J f 11.808 8.4364   12 2.4354 0.7144 0.366666667, 22.9 2.1
DBA/2J m 0.375 0.73528   12 0.21226 1.9607 -1.19
FVB/NJ f 6.4972 3.9424   12 1.1381 0.6068 0.266666667, 14.13333333 -0.14
FVB/NJ m 20.081 7.6648   12 2.2126 0.3817 6.733333333, 32.66666667 2.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.9722 1.2532 8.4421 3.5024
129S1/SvImJ m 1.6222 1.2532 4.0921 -0.8476
A/J f 3.6361 1.2532 6.1059 1.1663
A/J m 1.6556 1.2532 4.1254 -0.8143
B6129SF1/J f 4.8944 1.2532 7.3643 2.4246
B6129SF1/J m 9.9778 1.2532 12.4476 7.5079
B6C3F1/J f 8.8944 1.2532 11.3643 6.4246
B6C3F1/J m 10.7389 1.2532 13.2087 8.2691
BALB/cByJ f 8.55 1.2532 11.0198 6.0802
BALB/cByJ m 7.525 1.2532 9.9948 5.0552
C3H/HeJ f 6.0361 1.2532 8.5059 3.5663
C3H/HeJ m 7.9361 1.2532 10.4059 5.4663
C57BL/6J f 6.8861 1.2532 9.3559 4.4163
C57BL/6J m 7.6417 1.2532 10.1115 5.1718
CBA/J f 5.0806 1.2532 7.5504 2.6107
CBA/J m 5.1 1.2532 7.5698 2.6302
DBA/2J f 11.8083 1.2532 14.2782 9.3385
DBA/2J m 0.375 1.2532 2.8448 -2.0948
FVB/NJ f 6.4972 1.2532 8.9671 4.0274
FVB/NJ m 20.0806 1.2532 22.5504 17.6107


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.7972 0.8862 5.5437 2.0508
A/J both 2.6458 0.8862 4.3923 0.8994
B6129SF1/J both 7.4361 0.8862 9.1825 5.6897
B6C3F1/J both 9.8167 0.8862 11.5631 8.0702
BALB/cByJ both 8.0375 0.8862 9.7839 6.2911
C3H/HeJ both 6.9861 0.8862 8.7325 5.2397
C57BL/6J both 7.2639 0.8862 9.0103 5.5175
CBA/J both 5.0903 0.8862 6.8367 3.3438
DBA/2J both 6.0917 0.8862 7.8381 4.3452
FVB/NJ both 13.2889 0.8862 15.0353 11.5425




  GWAS USING LINEAR MIXED MODELS