Project measure / variable:   Bolivar1   vert_bouts_d3

ID, description, units MPD:63418   vert_bouts_d3   number of vertical movement episodes, 5 min test in dark   [n]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of vertical movement episodes, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means15.967   n 18.692   n
Median of the strain means14.417   n 17.0   n
SD of the strain means± 7.3346 ± 15.507
Coefficient of variation (CV)0.4594 0.8296
Min–max range of strain means7.3333   –   32.25   n 0.5   –   54.75   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 445.5375 445.5375 2.4625 0.118
strain 9 14807.7042 1645.3005 9.0935 < 0.0001
sex:strain 9 16972.6708 1885.8523 10.423 < 0.0001
Residuals 220 39805.0833 180.9322


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.667 10.924   12 3.1535 0.9363 -0.59
129S1/SvImJ m 2.0 6.9282   12 2.0 3.4641 -1.08
A/J f 7.3333 7.9696   12 2.3006 1.0868 -1.18
A/J m 10.75 12.693   12 3.6642 1.1807 1.0, 34.0 -0.51
B6129SF1/J f 9.4167 13.153   12 3.7968 1.3967 -0.89
B6129SF1/J m 25.25 14.716   12 4.2482 0.5828 3.0, 48.0 0.42
B6C3F1/J f 21.25 10.083   12 2.9106 0.4745 3.0, 38.0 0.72
B6C3F1/J m 25.25 11.323   12 3.2686 0.4484 3.0, 44.0 0.42
BALB/cByJ f 20.917 22.018   12 6.3562 1.0527 1.0, 68.0 0.67
BALB/cByJ m 23.5 12.559   12 3.6255 0.5344 1.0, 47.0 0.31
C3H/HeJ f 11.083 7.0898   12 2.0466 0.6397 -0.67
C3H/HeJ m 19.833 8.0208   12 2.3154 0.4044 7.0, 32.0 0.07
C57BL/6J f 15.167 6.7532   12 1.9495 0.4453 8.0, 32.0 -0.11
C57BL/6J m 14.167 7.9525   12 2.2957 0.5614 6.0, 33.0 -0.29
CBA/J f 13.667 22.504   12 6.4963 1.6466 1.0, 67.0 -0.31
CBA/J m 10.917 6.9211   12 1.9979 0.634 -0.5
DBA/2J f 32.25 24.35   12 7.0293 0.755 1.0, 63.0 2.22
DBA/2J m 0.5 1.446   12 0.41742 2.892 -1.17
FVB/NJ f 16.917 16.048   12 4.6327 0.9486 0.13
FVB/NJ m 54.75 18.286   12 5.2788 0.334 12.0, 76.0 2.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.6667 3.883 19.3193 4.014
129S1/SvImJ m 2.0 3.883 9.6526 -5.6526
A/J f 7.3333 3.883 14.986 -0.3193
A/J m 10.75 3.883 18.4026 3.0974
B6129SF1/J f 9.4167 3.883 17.0693 1.764
B6129SF1/J m 25.25 3.883 32.9026 17.5974
B6C3F1/J f 21.25 3.883 28.9026 13.5974
B6C3F1/J m 25.25 3.883 32.9026 17.5974
BALB/cByJ f 20.9167 3.883 28.5693 13.264
BALB/cByJ m 23.5 3.883 31.1526 15.8474
C3H/HeJ f 11.0833 3.883 18.736 3.4307
C3H/HeJ m 19.8333 3.883 27.486 12.1807
C57BL/6J f 15.1667 3.883 22.8193 7.514
C57BL/6J m 14.1667 3.883 21.8193 6.514
CBA/J f 13.6667 3.883 21.3193 6.014
CBA/J m 10.9167 3.883 18.5693 3.264
DBA/2J f 32.25 3.883 39.9026 24.5974
DBA/2J m 0.5 3.883 8.1526 -7.1526
FVB/NJ f 16.9167 3.883 24.5693 9.264
FVB/NJ m 54.75 3.883 62.4026 47.0974


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.8333 2.7457 12.2446 1.4221
A/J both 9.0417 2.7457 14.4529 3.6304
B6129SF1/J both 17.3333 2.7457 22.7446 11.9221
B6C3F1/J both 23.25 2.7457 28.6612 17.8388
BALB/cByJ both 22.2083 2.7457 27.6196 16.7971
C3H/HeJ both 15.4583 2.7457 20.8696 10.0471
C57BL/6J both 14.6667 2.7457 20.0779 9.2554
CBA/J both 12.2917 2.7457 17.7029 6.8804
DBA/2J both 16.375 2.7457 21.7862 10.9638
FVB/NJ both 35.8333 2.7457 41.2446 30.4221




  GWAS USING LINEAR MIXED MODELS