Project measure / variable:   Bolivar1   vert_bouts_d2

ID, description, units MPD:63417   vert_bouts_d2   number of vertical movement episodes, 5 min test in dark   [n]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of vertical movement episodes, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means18.208   n 21.434   n
Median of the strain means16.084   n 20.625   n
SD of the strain means± 8.7635 ± 17.17
Coefficient of variation (CV)0.4813 0.8011
Min–max range of strain means4.9167   –   35.083   n 0.75   –   58.92   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 624.0375 624.0375 3.1138 0.079
strain 9 18320.2542 2035.5838 10.1572 < 0.0001
sex:strain 9 21811.4208 2423.4912 12.0928 < 0.0001
Residuals 220 44089.5833 200.4072


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.917 13.912   12 4.016 0.874 -0.26
129S1/SvImJ m 2.8333 9.1932   12 2.6539 3.2447 -1.08
A/J f 4.9167 4.5017   12 1.2995 0.9156 -1.52
A/J m 10.083 11.269   12 3.2531 1.1176 2.0, 42.0 -0.66
B6129SF1/J f 11.083 12.76   12 3.6834 1.1513 -0.81
B6129SF1/J m 31.917 14.687   12 4.2399 0.4602 6.0, 56.0 0.61
B6C3F1/J f 30.0 13.571   12 3.9177 0.4524 9.0, 52.0 1.35
B6C3F1/J m 30.25 10.687   12 3.085 0.3533 10.0, 43.0 0.51
BALB/cByJ f 21.333 20.747   12 5.989 0.9725 2.0, 66.0 0.36
BALB/cByJ m 27.333 13.303   12 3.8402 0.4867 2.0, 56.0 0.34
C3H/HeJ f 15.5 7.7048   12 2.2242 0.4971 -0.31
C3H/HeJ m 23.167 7.6138   12 2.1979 0.3287 14.0, 35.0 0.1
C57BL/6J f 17.417 4.981   12 1.4379 0.286 10.0, 24.0 -0.09
C57BL/6J m 18.083 9.2093   12 2.6585 0.5093 7.0, 36.0 -0.2
CBA/J f 14.583 23.419   12 6.7605 1.6059 -0.41
CBA/J m 11.0 7.2363   12 2.0889 0.6578 -0.61
DBA/2J f 35.083 25.928   12 7.4848 0.739 1.93
DBA/2J m 0.75 1.2154   12 0.35086 1.6206 -1.2
FVB/NJ f 16.25 20.023   12 5.7802 1.2322 -0.22
FVB/NJ m 58.92 19.902   12 5.7452 0.3378 7.0, 79.0 2.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.9167 4.0866 23.9706 7.8627
129S1/SvImJ m 2.8333 4.0866 10.8873 -5.2206
A/J f 4.9167 4.0866 12.9706 -3.1373
A/J m 10.0833 4.0866 18.1373 2.0294
B6129SF1/J f 11.0833 4.0866 19.1373 3.0294
B6129SF1/J m 31.9167 4.0866 39.9706 23.8627
B6C3F1/J f 30.0 4.0866 38.054 21.946
B6C3F1/J m 30.25 4.0866 38.304 22.196
BALB/cByJ f 21.3333 4.0866 29.3873 13.2794
BALB/cByJ m 27.3333 4.0866 35.3873 19.2794
C3H/HeJ f 15.5 4.0866 23.554 7.446
C3H/HeJ m 23.1667 4.0866 31.2206 15.1127
C57BL/6J f 17.4167 4.0866 25.4706 9.3627
C57BL/6J m 18.0833 4.0866 26.1373 10.0294
CBA/J f 14.5833 4.0866 22.6373 6.5294
CBA/J m 11.0 4.0866 19.054 2.946
DBA/2J f 35.0833 4.0866 43.1373 27.0294
DBA/2J m 0.75 4.0866 8.804 -7.304
FVB/NJ f 16.25 4.0866 24.304 8.196
FVB/NJ m 58.9167 4.0866 66.9706 50.8627


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.375 2.8897 15.07 3.68
A/J both 7.5 2.8897 13.195 1.805
B6129SF1/J both 21.5 2.8897 27.195 15.805
B6C3F1/J both 30.125 2.8897 35.82 24.43
BALB/cByJ both 24.3333 2.8897 30.0283 18.6383
C3H/HeJ both 19.3333 2.8897 25.0283 13.6383
C57BL/6J both 17.75 2.8897 23.445 12.055
CBA/J both 12.7917 2.8897 18.4867 7.0967
DBA/2J both 17.9167 2.8897 23.6117 12.2217
FVB/NJ both 37.5833 2.8897 43.2783 31.8883




  GWAS USING LINEAR MIXED MODELS