Project measure / variable:   Bolivar1   vert_bouts_d1

ID, description, units MPD:63416   vert_bouts_d1   number of vertical movement episodes, 5 min test in dark   [n]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of vertical movement episodes, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means23.367   n 24.775   n
Median of the strain means21.75   n 26.834   n
SD of the strain means± 7.4694 ± 16.782
Coefficient of variation (CV)0.3197 0.6774
Min–max range of strain means12.75   –   39.417   n 2.5833   –   56.75   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 119.0042 119.0042 0.6832 0.4094
strain 9 17762.9208 1973.6579 11.33 < 0.0001
sex:strain 9 18680.4542 2075.606 11.9153 < 0.0001
Residuals 220 38323.4167 174.1973


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 20.583 15.418   12 4.4508 0.7491 1.0, 45.0 -0.37
129S1/SvImJ m 5.9167 10.013   12 2.8906 1.6924 -1.12
A/J f 12.75 10.524   12 3.038 0.8254 -1.42
A/J m 8.0833 7.3045   12 2.1086 0.9037 -0.99
B6129SF1/J f 19.333 16.951   12 4.8933 0.8768 -0.54
B6129SF1/J m 36.417 13.714   12 3.959 0.3766 13.0, 58.0 0.69
B6C3F1/J f 31.0 8.7178   12 2.5166 0.2812 15.0, 45.0 1.02
B6C3F1/J m 35.0 12.721   12 3.6722 0.3635 14.0, 61.0 0.61
BALB/cByJ f 26.0 17.498   12 5.0513 0.673 6.0, 60.0 0.35
BALB/cByJ m 32.417 12.041   12 3.476 0.3715 11.0, 55.0 0.46
C3H/HeJ f 18.833 7.1837   12 2.0738 0.3814 5.0, 29.0 -0.61
C3H/HeJ m 29.75 9.5263   12 2.75 0.3202 18.0, 46.0 0.3
C57BL/6J f 22.917 4.1661   12 1.2026 0.1818 15.0, 30.0 -0.06
C57BL/6J m 23.917 6.543   12 1.8888 0.2736 17.0, 37.0 -0.05
CBA/J f 18.75 21.08   12 6.0854 1.1243 3.0, 65.0 -0.62
CBA/J m 16.917 5.9308   12 1.7121 0.3506 4.0, 26.0 -0.47
DBA/2J f 39.417 24.545   12 7.0855 0.6227 1.0, 69.0 2.15
DBA/2J m 2.5833 4.0778   12 1.1772 1.5785 -1.32
FVB/NJ f 24.083 14.632   12 4.2238 0.6075 2.0, 52.0 0.1
FVB/NJ m 56.75 17.384   12 5.0183 0.3063 22.0, 75.0 1.91


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 20.5833 3.81 28.0922 13.0745
129S1/SvImJ m 5.9167 3.81 13.4255 -1.5922
A/J f 12.75 3.81 20.2589 5.2411
A/J m 8.0833 3.81 15.5922 0.5745
B6129SF1/J f 19.3333 3.81 26.8422 11.8245
B6129SF1/J m 36.4167 3.81 43.9255 28.9078
B6C3F1/J f 31.0 3.81 38.5089 23.4911
B6C3F1/J m 35.0 3.81 42.5089 27.4911
BALB/cByJ f 26.0 3.81 33.5089 18.4911
BALB/cByJ m 32.4167 3.81 39.9255 24.9078
C3H/HeJ f 18.8333 3.81 26.3422 11.3245
C3H/HeJ m 29.75 3.81 37.2589 22.2411
C57BL/6J f 22.9167 3.81 30.4255 15.4078
C57BL/6J m 23.9167 3.81 31.4255 16.4078
CBA/J f 18.75 3.81 26.2589 11.2411
CBA/J m 16.9167 3.81 24.4255 9.4078
DBA/2J f 39.4167 3.81 46.9255 31.9078
DBA/2J m 2.5833 3.81 10.0922 -4.9255
FVB/NJ f 24.0833 3.81 31.5922 16.5745
FVB/NJ m 56.75 3.81 64.2589 49.2411


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 13.25 2.6941 18.5596 7.9404
A/J both 10.4167 2.6941 15.7262 5.1071
B6129SF1/J both 27.875 2.6941 33.1846 22.5654
B6C3F1/J both 33.0 2.6941 38.3096 27.6904
BALB/cByJ both 29.2083 2.6941 34.5179 23.8988
C3H/HeJ both 24.2917 2.6941 29.6012 18.9821
C57BL/6J both 23.4167 2.6941 28.7262 18.1071
CBA/J both 17.8333 2.6941 23.1429 12.5238
DBA/2J both 21.0 2.6941 26.3096 15.6904
FVB/NJ both 40.4167 2.6941 45.7262 35.1071




  GWAS USING LINEAR MIXED MODELS