Project measure / variable:   Bolivar1   vert_act_d2

ID, description, units MPD:63414   vert_act_d2   vertical activity (beam breaks), 5 min test in dark   [n]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - vertical activity (beam breaks), 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means35.724   n 45.809   n
Median of the strain means32.0   n 41.166   n
SD of the strain means± 18.086 ± 44.112
Coefficient of variation (CV)0.5063 0.9629
Min–max range of strain means8.75   –   70.08   n 1.0   –   155.0   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6100.4167 6100.4167 5.9947 0.0151
strain 9 114668.1833 12740.9093 12.52 < 0.0001
sex:strain 9 130813.0 14534.7778 14.2828 < 0.0001
Residuals 220 223881.3333 1017.6424


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 33.417 31.497   12 9.0925 0.9426 -0.13
129S1/SvImJ m 5.4167 17.83   12 5.147 3.2917 -0.92
A/J f 8.75 8.4973   12 2.453 0.9711 -1.49
A/J m 15.833 22.295   12 6.436 1.4081 2.0, 82.0 -0.68
B6129SF1/J f 19.333 22.589   12 6.5208 1.1684 -0.91
B6129SF1/J m 59.42 28.997   12 8.3706 0.488 16.0, 111.0 0.31
B6C3F1/J f 60.58 29.491   12 8.5133 0.4868 12.0, 102.0 1.37
B6C3F1/J m 56.17 22.815   12 6.5861 0.4062 15.0, 89.0 0.23
BALB/cByJ f 41.917 42.809   12 12.358 1.0213 3.0, 130.0 0.34
BALB/cByJ m 59.42 35.62   12 10.283 0.5995 3.0, 139.0 0.31
C3H/HeJ f 28.75 14.454   12 4.1726 0.5028 -0.39
C3H/HeJ m 45.25 17.98   12 5.1905 0.3974 27.0, 83.0 -0.01
C57BL/6J f 31.167 12.142   12 3.505 0.3896 14.0, 48.0 -0.25
C57BL/6J m 37.083 22.023   12 6.3574 0.5939 13.0, 94.0 -0.2
CBA/J f 30.417 55.13   12 15.915 1.8125 -0.29
CBA/J m 23.5 15.139   12 4.3702 0.6442 1.0, 51.0 -0.51
DBA/2J f 70.08 54.51   12 15.736 0.7778 1.9
DBA/2J m 1.0 1.7581   12 0.50752 1.7581 -1.02
FVB/NJ f 32.833 41.661   12 12.026 1.2689 -0.16
FVB/NJ m 155.0 59.06   12 17.048 0.381 14.0, 209.0 2.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 33.4167 9.2089 51.5656 15.2677
129S1/SvImJ m 5.4167 9.2089 23.5656 -12.7323
A/J f 8.75 9.2089 26.8989 -9.3989
A/J m 15.8333 9.2089 33.9823 -2.3156
B6129SF1/J f 19.3333 9.2089 37.4823 1.1844
B6129SF1/J m 59.4167 9.2089 77.5656 41.2677
B6C3F1/J f 60.5833 9.2089 78.7323 42.4344
B6C3F1/J m 56.1667 9.2089 74.3156 38.0177
BALB/cByJ f 41.9167 9.2089 60.0656 23.7677
BALB/cByJ m 59.4167 9.2089 77.5656 41.2677
C3H/HeJ f 28.75 9.2089 46.8989 10.6011
C3H/HeJ m 45.25 9.2089 63.3989 27.1011
C57BL/6J f 31.1667 9.2089 49.3156 13.0177
C57BL/6J m 37.0833 9.2089 55.2323 18.9344
CBA/J f 30.4167 9.2089 48.5656 12.2677
CBA/J m 23.5 9.2089 41.6489 5.3511
DBA/2J f 70.0833 9.2089 88.2323 51.9344
DBA/2J m 1.0 9.2089 19.1489 -17.1489
FVB/NJ f 32.8333 9.2089 50.9823 14.6844
FVB/NJ m 155.0 9.2089 173.1489 136.8511


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 19.4167 6.5117 32.2499 6.5834
A/J both 12.2917 6.5117 25.1249 -0.5416
B6129SF1/J both 39.375 6.5117 52.2082 26.5418
B6C3F1/J both 58.375 6.5117 71.2082 45.5418
BALB/cByJ both 50.6667 6.5117 63.4999 37.8334
C3H/HeJ both 37.0 6.5117 49.8332 24.1668
C57BL/6J both 34.125 6.5117 46.9582 21.2918
CBA/J both 26.9583 6.5117 39.7916 14.1251
DBA/2J both 35.5417 6.5117 48.3749 22.7084
FVB/NJ both 93.9167 6.5117 106.7499 81.0834




  GWAS USING LINEAR MIXED MODELS