Project measure / variable:   Bolivar1   move_time_pct_d3

ID, description, units MPD:63409   move_time_pct_d3   percentage of time spent moving, 5 min test in dark   [%]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent moving, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means30.328   % 34.42   %
Median of the strain means29.329   % 36.716   %
SD of the strain means± 4.9114 ± 9.5067
Coefficient of variation (CV)0.1619 0.2762
Min–max range of strain means22.683   –   38.186   % 16.069   –   45.894   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1004.5042 1004.5042 9.5055 0.0023
strain 9 5397.5612 599.729 5.6752 < 0.0001
sex:strain 9 6968.3818 774.2646 7.3268 < 0.0001
Residuals 220 23248.6406 105.6756


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 29.575 13.527   12 3.9048 0.4574 5.866666667, 48.73333333 -0.15
129S1/SvImJ m 16.069 8.9051   12 2.5707 0.5542 1.233333333, 35.2 -1.93
A/J f 27.736 11.92   12 3.441 0.4298 10.86666667, 47.3 -0.53
A/J m 35.542 15.165   12 4.3777 0.4267 11.3, 59.56666667 0.12
B6129SF1/J f 22.683 12.366   12 3.5699 0.5452 5.5, 41.6 -1.56
B6129SF1/J m 34.906 11.703   12 3.3784 0.3353 12.83333333, 56.63333333 0.05
B6C3F1/J f 35.072 7.398   12 2.1356 0.2109 23.63333333, 43.33333333 0.97
B6C3F1/J m 38.378 9.7414   12 2.8121 0.2538 23.9, 60.63333333 0.42
BALB/cByJ f 35.669 12.421   12 3.5857 0.3482 10.23333333, 52.33333333 1.09
BALB/cByJ m 45.894 13.961   12 4.0301 0.3042 25.0, 68.43333333 1.21
C3H/HeJ f 26.522 4.1347   12 1.1936 0.1559 19.0, 31.96666667 -0.78
C3H/HeJ m 38.583 5.2612   12 1.5188 0.1364 30.7, 50.4 0.44
C57BL/6J f 32.6 9.9992   12 2.8865 0.3067 19.6, 48.0 0.46
C57BL/6J m 29.575 6.1714   12 1.7815 0.2087 18.7, 41.0 -0.51
CBA/J f 26.158 10.536   12 3.0415 0.4028 3.266666667, 41.06666667 -0.85
CBA/J m 37.889 7.9363   12 2.291 0.2095 26.33333333, 52.43333333 0.36
DBA/2J f 38.186 8.3714   12 2.4166 0.2192 19.6, 50.3 1.6
DBA/2J m 21.981 12.807   12 3.697 0.5826 7.133333333, 50.96666667 -1.31
FVB/NJ f 29.083 7.0944   12 2.048 0.2439 17.0, 40.46666667 -0.25
FVB/NJ m 45.386 7.0148   12 2.025 0.1546 35.1, 58.53333333 1.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 29.575 2.9675 35.4234 23.7266
129S1/SvImJ m 16.0694 2.9675 21.9179 10.221
A/J f 27.7361 2.9675 33.5846 21.8877
A/J m 35.5417 2.9675 41.3901 29.6932
B6129SF1/J f 22.6833 2.9675 28.5318 16.8349
B6129SF1/J m 34.9056 2.9675 40.754 29.0571
B6C3F1/J f 35.0722 2.9675 40.9207 29.2238
B6C3F1/J m 38.3778 2.9675 44.2262 32.5293
BALB/cByJ f 35.6694 2.9675 41.5179 29.821
BALB/cByJ m 45.8944 2.9675 51.7429 40.046
C3H/HeJ f 26.5222 2.9675 32.3707 20.6738
C3H/HeJ m 38.5833 2.9675 44.4318 32.7349
C57BL/6J f 32.6 2.9675 38.4484 26.7516
C57BL/6J m 29.575 2.9675 35.4234 23.7266
CBA/J f 26.1583 2.9675 32.0068 20.3099
CBA/J m 37.8889 2.9675 43.7373 32.0404
DBA/2J f 38.1861 2.9675 44.0346 32.3377
DBA/2J m 21.9806 2.9675 27.829 16.1321
FVB/NJ f 29.0833 2.9675 34.9318 23.2349
FVB/NJ m 45.3861 2.9675 51.2346 39.5377


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 22.8222 2.0984 26.9577 18.6867
A/J both 31.6389 2.0984 35.7744 27.5034
B6129SF1/J both 28.7944 2.0984 32.9299 24.659
B6C3F1/J both 36.725 2.0984 40.8605 32.5895
BALB/cByJ both 40.7819 2.0984 44.9174 36.6465
C3H/HeJ both 32.5528 2.0984 36.6883 28.4173
C57BL/6J both 31.0875 2.0984 35.223 26.952
CBA/J both 32.0236 2.0984 36.1591 27.8881
DBA/2J both 30.0833 2.0984 34.2188 25.9479
FVB/NJ both 37.2347 2.0984 41.3702 33.0992




  GWAS USING LINEAR MIXED MODELS