Project measure / variable:   Bolivar1   move_time_pct_d1

ID, description, units MPD:63407   move_time_pct_d1   percentage of time spent moving, 5 min test in dark   [%]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent moving, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means37.52   % 39.717   %
Median of the strain means38.019   % 42.522   %
SD of the strain means± 5.8589 ± 10.242
Coefficient of variation (CV)0.1562 0.2579
Min–max range of strain means27.417   –   46.95   % 22.836   –   54.07   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 289.5207 289.5207 3.508 0.0624
strain 9 11334.0927 1259.3436 15.2589 < 0.0001
sex:strain 9 3703.6473 411.5164 4.9862 < 0.0001
Residuals 220 18156.9848 82.5317


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 38.647 16.415   12 4.7385 0.4247 10.93333333, 60.2 0.19
129S1/SvImJ m 27.769 13.729   12 3.9632 0.4944 5.133333333, 44.86666667 -1.17
A/J f 27.417 12.92   12 3.7298 0.4713 7.433333333, 46.43333333 -1.72
A/J m 22.836 7.7677   12 2.2423 0.3401 11.2, 33.63333333 -1.65
B6129SF1/J f 45.019 8.678   12 2.5051 0.1928 28.86666667, 56.93333333 1.28
B6129SF1/J m 48.364 9.091   12 2.6244 0.188 35.33333333, 64.76666667 0.84
B6C3F1/J f 46.95 8.4355   12 2.4351 0.1797 33.76666667, 60.0 1.61
B6C3F1/J m 44.967 6.9528   12 2.0071 0.1546 34.56666667, 56.53333333 0.51
BALB/cByJ f 37.486 9.1264   12 2.6346 0.2435 18.4, 49.4 -0.01
BALB/cByJ m 54.07 3.708   12 1.0704 0.0686 46.96666667, 59.2 1.4
C3H/HeJ f 38.553 5.8714   12 1.6949 0.1523 29.1, 50.93333333 0.18
C3H/HeJ m 48.783 7.7049   12 2.2242 0.1579 39.03333333, 62.36666667 0.89
C57BL/6J f 39.522 8.0558   12 2.3255 0.2038 23.46666667, 47.2 0.34
C57BL/6J m 42.475 6.0937   12 1.7591 0.1435 30.16666667, 52.03333333 0.27
CBA/J f 30.922 7.1394   12 2.061 0.2309 18.26666667, 44.5 -1.13
CBA/J m 34.989 4.0768   12 1.1769 0.1165 29.6, 42.23333333 -0.46
DBA/2J f 36.431 3.6586   12 1.0562 0.1004 29.8, 43.46666667 -0.19
DBA/2J m 30.347 14.999   12 4.3299 0.4943 10.2, 50.4 -0.91
FVB/NJ f 34.258 4.9955   12 1.4421 0.1458 25.43333333, 42.43333333 -0.56
FVB/NJ m 42.569 8.0103   12 2.3124 0.1882 30.73333333, 56.6 0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 38.6472 2.6225 43.8157 33.4787
129S1/SvImJ m 27.7694 2.6225 32.9379 22.601
A/J f 27.4167 2.6225 32.5852 22.2482
A/J m 22.8361 2.6225 28.0046 17.6676
B6129SF1/J f 45.0194 2.6225 50.1879 39.851
B6129SF1/J m 48.3639 2.6225 53.5324 43.1954
B6C3F1/J f 46.95 2.6225 52.1185 41.7815
B6C3F1/J m 44.9667 2.6225 50.1352 39.7982
BALB/cByJ f 37.4861 2.6225 42.6546 32.3176
BALB/cByJ m 54.0722 2.6225 59.2407 48.9037
C3H/HeJ f 38.5528 2.6225 43.7213 33.3843
C3H/HeJ m 48.7833 2.6225 53.9518 43.6148
C57BL/6J f 39.5222 2.6225 44.6907 34.3537
C57BL/6J m 42.475 2.6225 47.6435 37.3065
CBA/J f 30.9222 2.6225 36.0907 25.7537
CBA/J m 34.9889 2.6225 40.1574 29.8204
DBA/2J f 36.4306 2.6225 41.599 31.2621
DBA/2J m 30.3472 2.6225 35.5157 25.1787
FVB/NJ f 34.2583 2.6225 39.4268 29.0898
FVB/NJ m 42.5694 2.6225 47.7379 37.401


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.2083 1.8544 36.863 29.5537
A/J both 25.1264 1.8544 28.7811 21.4717
B6129SF1/J both 46.6917 1.8544 50.3463 43.037
B6C3F1/J both 45.9583 1.8544 49.613 42.3037
BALB/cByJ both 45.7792 1.8544 49.4338 42.1245
C3H/HeJ both 43.6681 1.8544 47.3227 40.0134
C57BL/6J both 40.9986 1.8544 44.6533 37.3439
CBA/J both 32.9556 1.8544 36.6102 29.3009
DBA/2J both 33.3889 1.8544 37.0436 29.7342
FVB/NJ both 38.4139 1.8544 42.0686 34.7592




  GWAS USING LINEAR MIXED MODELS