Project measure / variable:   Bolivar1   horiz_bouts_d1

ID, description, units MPD:63404   horiz_bouts_d1   number of horizontal movement episodes, 5 min test in dark   [n]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of horizontal movement episodes, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means68.02   n 68.4   n
Median of the strain means67.0   n 67.7   n
SD of the strain means± 4.2457 ± 5.0217
Coefficient of variation (CV)0.0624 0.0734
Min–max range of strain means62.58   –   74.42   n 62.25   –   77.58   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 8.4375 8.4375 0.0809 0.7763
strain 9 3890.7042 432.3005 4.1453 0.0001
sex:strain 9 777.7708 86.419 0.8287 0.5904
Residuals 220 22943.25 104.2875


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 66.75 12.484   12 3.6037 0.187 38.0, 89.0 -0.3
129S1/SvImJ m 63.33 20.164   12 5.821 0.3184 24.0, 84.0 -1.01
A/J f 62.58 15.722   12 4.5385 0.2512 27.0, 83.0 -1.28
A/J m 69.92 15.168   12 4.3788 0.217 38.0, 87.0 0.3
B6129SF1/J f 65.25 6.2249   12 1.797 0.0954 51.0, 74.0 -0.65
B6129SF1/J m 65.17 6.7262   12 1.9417 0.1032 55.0, 76.0 -0.64
B6C3F1/J f 67.25 7.3747   12 2.1289 0.1097 51.0, 78.0 -0.18
B6C3F1/J m 66.58 8.1403   12 2.3499 0.1223 56.0, 82.0 -0.36
BALB/cByJ f 66.17 8.4728   12 2.4459 0.1281 51.0, 81.0 -0.44
BALB/cByJ m 68.83 6.3365   12 1.8292 0.0921 58.0, 78.0 0.09
C3H/HeJ f 68.58 7.4646   12 2.1548 0.1088 55.0, 80.0 0.13
C3H/HeJ m 64.33 4.9237   12 1.4213 0.0765 56.0, 74.0 -0.81
C57BL/6J f 63.08 6.7751   12 1.9558 0.1074 54.0, 75.0 -1.16
C57BL/6J m 62.25 9.5072   12 2.7445 0.1527 45.0, 78.0 -1.22
CBA/J f 74.17 9.9438   12 2.8705 0.1341 56.0, 85.0 1.45
CBA/J m 74.42 5.7122   12 1.649 0.0768 62.0, 82.0 1.2
DBA/2J f 74.42 6.1268   12 1.7687 0.0823 62.0, 82.0 1.51
DBA/2J m 71.58 13.681   12 3.9494 0.1911 50.0, 92.0 0.63
FVB/NJ f 72.0 8.676   12 2.5045 0.1205 58.0, 87.0 0.94
FVB/NJ m 77.58 9.0399   12 2.6096 0.1165 56.0, 86.0 1.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 66.75 2.948 72.5599 60.9401
129S1/SvImJ m 63.3333 2.948 69.1432 57.5234
A/J f 62.5833 2.948 68.3932 56.7734
A/J m 69.9167 2.948 75.7266 64.1068
B6129SF1/J f 65.25 2.948 71.0599 59.4401
B6129SF1/J m 65.1667 2.948 70.9766 59.3568
B6C3F1/J f 67.25 2.948 73.0599 61.4401
B6C3F1/J m 66.5833 2.948 72.3932 60.7734
BALB/cByJ f 66.1667 2.948 71.9766 60.3568
BALB/cByJ m 68.8333 2.948 74.6432 63.0234
C3H/HeJ f 68.5833 2.948 74.3932 62.7734
C3H/HeJ m 64.3333 2.948 70.1432 58.5234
C57BL/6J f 63.0833 2.948 68.8932 57.2734
C57BL/6J m 62.25 2.948 68.0599 56.4401
CBA/J f 74.1667 2.948 79.9766 68.3568
CBA/J m 74.4167 2.948 80.2266 68.6068
DBA/2J f 74.4167 2.948 80.2266 68.6068
DBA/2J m 71.5833 2.948 77.3932 65.7734
FVB/NJ f 72.0 2.948 77.8099 66.1901
FVB/NJ m 77.5833 2.948 83.3932 71.7734


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 65.0417 2.0845 69.1499 60.9334
A/J both 66.25 2.0845 70.3582 62.1418
B6129SF1/J both 65.2083 2.0845 69.3166 61.1001
B6C3F1/J both 66.9167 2.0845 71.0249 62.8084
BALB/cByJ both 67.5 2.0845 71.6082 63.3918
C3H/HeJ both 66.4583 2.0845 70.5666 62.3501
C57BL/6J both 62.6667 2.0845 66.7749 58.5584
CBA/J both 74.2917 2.0845 78.3999 70.1834
DBA/2J both 73.0 2.0845 77.1082 68.8918
FVB/NJ both 74.7917 2.0845 78.8999 70.6834




  GWAS USING LINEAR MIXED MODELS