Project measure / variable:   Bolivar1   horiz_act_d3

ID, description, units MPD:63403   horiz_act_d3   horizontal activity (beam breaks), 5 min test in dark   [n]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - horizontal activity (beam breaks), 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1304.0   n 1353.0   n
Median of the strain means1330.0   n 1284.0   n
SD of the strain means± 308.5 ± 341.0
Coefficient of variation (CV)0.2366 0.2521
Min–max range of strain means856.2   –   1865.0   n 762.8   –   1963.0   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 144599.5042 144599.5042 1.9685 0.162
strain 9 20105759.0875 2233973.2319 30.4127 < 0.0001
sex:strain 9 2740032.9542 304448.106 4.1447 0.0001
Residuals 220 16160179.75 73455.3625


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1180.0 354.3   12 102.3 0.3003 615.0, 1531.0 -0.4
129S1/SvImJ m 762.8 276.1   12 79.71 0.362 375.0, 1206.0 -1.73
A/J f 856.2 268.3   12 77.45 0.3134 283.0, 1129.0 -1.45
A/J m 1217.0 481.4   12 139.0 0.3955 596.0, 2028.0 -0.4
B6129SF1/J f 922.8 187.2   12 54.05 0.2029 496.0, 1209.0 -1.23
B6129SF1/J m 1080.0 111.8   12 32.267 0.1035 853.0, 1243.0 -0.8
B6C3F1/J f 1339.0 156.6   12 45.217 0.117 1144.0, 1694.0 0.11
B6C3F1/J m 1281.0 154.7   12 44.647 0.1207 1105.0, 1564.0 -0.21
BALB/cByJ f 1617.0 311.8   12 90.01 0.1928 1058.0, 2231.0 1.02
BALB/cByJ m 1613.0 483.9   12 139.7 0.2999 857.0, 2319.0 0.76
C3H/HeJ f 1098.0 221.5   12 63.95 0.2017 799.0, 1656.0 -0.67
C3H/HeJ m 1168.0 168.4   12 48.616 0.1442 833.0, 1403.0 -0.54
C57BL/6J f 1497.0 286.9   12 82.83 0.1917 979.0, 1976.0 0.63
C57BL/6J m 1473.0 119.4   12 34.479 0.0811 1248.0, 1652.0 0.35
CBA/J f 1341.0 184.3   12 53.2 0.1374 1031.0, 1601.0 0.12
CBA/J m 1287.0 203.7   12 58.81 0.1582 863.0, 1643.0 -0.19
DBA/2J f 1320.0 300.3   12 86.68 0.2275 795.0, 1833.0 0.05
DBA/2J m 1681.0 115.9   12 33.471 0.069 1473.0, 1865.0 0.96
FVB/NJ f 1865.0 229.3   12 66.19 0.1229 1453.0, 2272.0 1.82
FVB/NJ m 1963.0 361.2   12 104.3 0.184 1481.0, 2783.0 1.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1179.8333 78.2386 1334.0264 1025.6402
129S1/SvImJ m 762.75 78.2386 916.9431 608.5569
A/J f 856.1667 78.2386 1010.3598 701.9736
A/J m 1217.1667 78.2386 1371.3598 1062.9736
B6129SF1/J f 922.8333 78.2386 1077.0264 768.6402
B6129SF1/J m 1079.8333 78.2386 1234.0264 925.6402
B6C3F1/J f 1339.1667 78.2386 1493.3598 1184.9736
B6C3F1/J m 1281.0833 78.2386 1435.2764 1126.8902
BALB/cByJ f 1617.0 78.2386 1771.1931 1462.8069
BALB/cByJ m 1613.4167 78.2386 1767.6098 1459.2236
C3H/HeJ f 1098.5 78.2386 1252.6931 944.3069
C3H/HeJ m 1168.25 78.2386 1322.4431 1014.0569
C57BL/6J f 1497.0 78.2386 1651.1931 1342.8069
C57BL/6J m 1472.8333 78.2386 1627.0264 1318.6402
CBA/J f 1340.8333 78.2386 1495.0264 1186.6402
CBA/J m 1287.4167 78.2386 1441.6098 1133.2236
DBA/2J f 1319.9167 78.2386 1474.1098 1165.7236
DBA/2J m 1681.1667 78.2386 1835.3598 1526.9736
FVB/NJ f 1865.0833 78.2386 2019.2764 1710.8902
FVB/NJ m 1963.3333 78.2386 2117.5264 1809.1402


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 971.2917 55.3231 1080.3226 862.2607
A/J both 1036.6667 55.3231 1145.6976 927.6357
B6129SF1/J both 1001.3333 55.3231 1110.3643 892.3024
B6C3F1/J both 1310.125 55.3231 1419.156 1201.094
BALB/cByJ both 1615.2083 55.3231 1724.2393 1506.1774
C3H/HeJ both 1133.375 55.3231 1242.406 1024.344
C57BL/6J both 1484.9167 55.3231 1593.9476 1375.8857
CBA/J both 1314.125 55.3231 1423.156 1205.094
DBA/2J both 1500.5417 55.3231 1609.5726 1391.5107
FVB/NJ both 1914.2083 55.3231 2023.2393 1805.1774




  GWAS USING LINEAR MIXED MODELS