Project measure / variable:   Bolivar1   horiz_act_d1

ID, description, units MPD:63401   horiz_act_d1   horizontal activity (beam breaks), 5 min test in dark   [n]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - horizontal activity (beam breaks), 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1514.0   n 1581.0   n
Median of the strain means1568.0   n 1684.0   n
SD of the strain means± 333.0 ± 362.9
Coefficient of variation (CV)0.22 0.2295
Min–max range of strain means882.4   –   2007.0   n 897.3   –   2007.0   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 273105.0667 273105.0667 4.3974 0.0371
strain 9 22226408.6 2469600.9556 39.7646 < 0.0001
sex:strain 9 3982717.35 442524.15 7.1254 < 0.0001
Residuals 220 13663210.1667 62105.5008


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1615.0 604.6   12 174.5 0.3743 631.0, 2578.0 0.3
129S1/SvImJ m 1134.0 302.3   12 87.26 0.2665 506.0, 1591.0 -1.23
A/J f 882.4 214.6   12 61.94 0.2431 391.0, 1162.0 -1.9
A/J m 897.3 189.9   12 54.83 0.2117 576.0, 1223.0 -1.88
B6129SF1/J f 1549.0 253.8   12 73.27 0.1638 1077.0, 1913.0 0.11
B6129SF1/J m 1751.0 234.8   12 67.79 0.1341 1326.0, 2124.0 0.47
B6C3F1/J f 1586.0 165.2   12 47.678 0.1041 1354.0, 1872.0 0.22
B6C3F1/J m 1616.0 283.2   12 81.76 0.1753 1170.0, 2248.0 0.1
BALB/cByJ f 1789.0 197.6   12 57.05 0.1105 1266.0, 2030.0 0.83
BALB/cByJ m 1914.0 182.1   12 52.58 0.0952 1640.0, 2179.0 0.92
C3H/HeJ f 1100.0 132.1   12 38.141 0.1202 951.0, 1383.0 -1.24
C3H/HeJ m 1475.0 214.5   12 61.93 0.1454 1032.0, 1762.0 -0.29
C57BL/6J f 2007.0 216.8   12 62.6 0.108 1573.0, 2370.0 1.48
C57BL/6J m 2007.0 220.6   12 63.67 0.1099 1623.0, 2343.0 1.17
CBA/J f 1518.0 210.1   12 60.66 0.1385 1227.0, 1809.0 0.01
CBA/J m 1347.0 156.0   12 45.038 0.1158 1036.0, 1672.0 -0.65
DBA/2J f 1333.0 207.2   12 59.82 0.1555 865.0, 1634.0 -0.54
DBA/2J m 1825.0 213.8   12 61.73 0.1172 1464.0, 2238.0 0.67
FVB/NJ f 1758.0 178.3   12 51.47 0.1014 1525.0, 2058.0 0.73
FVB/NJ m 1846.0 236.0   12 68.14 0.1278 1486.0, 2208.0 0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1615.25 71.9407 1757.0311 1473.4689
129S1/SvImJ m 1134.0 71.9407 1275.7811 992.2189
A/J f 882.4167 71.9407 1024.1977 740.6356
A/J m 897.3333 71.9407 1039.1144 755.5523
B6129SF1/J f 1549.4167 71.9407 1691.1977 1407.6356
B6129SF1/J m 1751.1667 71.9407 1892.9477 1609.3856
B6C3F1/J f 1586.0833 71.9407 1727.8644 1444.3023
B6C3F1/J m 1615.5833 71.9407 1757.3644 1473.8023
BALB/cByJ f 1788.8333 71.9407 1930.6144 1647.0523
BALB/cByJ m 1913.5 71.9407 2055.2811 1771.7189
C3H/HeJ f 1099.5833 71.9407 1241.3644 957.8023
C3H/HeJ m 1474.9167 71.9407 1616.6977 1333.1356
C57BL/6J f 2007.0833 71.9407 2148.8644 1865.3023
C57BL/6J m 2007.0 71.9407 2148.7811 1865.2189
CBA/J f 1517.6667 71.9407 1659.4477 1375.8856
CBA/J m 1346.75 71.9407 1488.5311 1204.9689
DBA/2J f 1332.5833 71.9407 1474.3644 1190.8023
DBA/2J m 1825.0 71.9407 1966.7811 1683.2189
FVB/NJ f 1758.1667 71.9407 1899.9477 1616.3856
FVB/NJ m 1846.5 71.9407 1988.2811 1704.7189


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1374.625 50.8697 1474.8793 1274.3707
A/J both 889.875 50.8697 990.1293 789.6207
B6129SF1/J both 1650.2917 50.8697 1750.546 1550.0373
B6C3F1/J both 1600.8333 50.8697 1701.0877 1500.579
BALB/cByJ both 1851.1667 50.8697 1951.421 1750.9123
C3H/HeJ both 1287.25 50.8697 1387.5043 1186.9957
C57BL/6J both 2007.0417 50.8697 2107.296 1906.7873
CBA/J both 1432.2083 50.8697 1532.4627 1331.954
DBA/2J both 1578.7917 50.8697 1679.046 1478.5373
FVB/NJ both 1802.3333 50.8697 1902.5877 1702.079




  GWAS USING LINEAR MIXED MODELS