Project measure / variable:   GMC21   spleen_wt

ID, description, units MPD:57005   spleen_wt   spleen weight   [g]  
Data set, strains GMC21   inbred w/CC8   8 strains     sex: both     age: 21wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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GMC21 - spleen weight



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.07751   g 0.07644   g
Median of the strain means0.07125   g 0.06842   g
SD of the strain means± 0.04324 ± 0.03811
Coefficient of variation (CV)0.5579 0.4986
Min–max range of strain means0.0308   –   0.1659   g 0.03483   –   0.15317   g
Mean sample size per strain10.4   mice 11.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 0.0025 0.96
strain 7 0.256 0.0366 128.6432 < 0.0001
sex:strain 7 0.0016 0.0002 0.8095 0.5806
Residuals 162 0.046 0.0003


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0671 0.01418   10 0.00448318 0.2113 0.044, 0.089 -0.24
129S1/SvImJ m 0.06075 0.01003   12 0.00289494 0.1651 0.041, 0.08 -0.41
A/J f 0.0754 0.01777   10 0.00561981 0.2357 0.051, 0.108 -0.05
A/J m 0.07092 0.01702   12 0.00491204 0.2399 0.049, 0.108 -0.14
C57BL/6J f 0.0861 0.01271   10 0.00402064 0.1477 0.073, 0.105 0.2
C57BL/6J m 0.08758 0.01291   12 0.00372636 0.1474 0.067, 0.109 0.29
CAST/EiJ f 0.03117 0.00554048   12 0.0015994 0.1778 0.025, 0.042 -1.07
CAST/EiJ m 0.03808 0.00768065   12 0.00221721 0.2017 0.029, 0.054 -1.01
NOD/ShiLtJ f 0.10082 0.03002   11 0.00905219 0.2978 0.039, 0.144 0.54
NOD/ShiLtJ m 0.10025 0.01208   12 0.00348617 0.1205 0.089, 0.134 0.62
NZO/HlLtJ f 0.1659 0.02425   10 0.00766732 0.1461 0.12, 0.197 2.04
NZO/HlLtJ m 0.15317 0.02751   12 0.00794091 0.1796 0.111, 0.193 2.01
PWK/PhJ f 0.0628 0.01472   10 0.00465427 0.2344 0.033, 0.086 -0.34
PWK/PhJ m 0.06591 0.02186   11 0.00658987 0.3316 0.043, 0.116 -0.28
WSB/EiJ f 0.0308 0.01021   10 0.00322766 0.3314 0.02, 0.05 -1.08
WSB/EiJ m 0.03483 0.00921297   12 0.00265955 0.2645 0.023, 0.058 -1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0671 0.0053 0.0776 0.0566
129S1/SvImJ m 0.0607 0.0049 0.0704 0.0511
A/J f 0.0754 0.0053 0.0859 0.0649
A/J m 0.0709 0.0049 0.0805 0.0613
C57BL/6J f 0.0861 0.0053 0.0966 0.0756
C57BL/6J m 0.0876 0.0049 0.0972 0.078
CAST/EiJ f 0.0312 0.0049 0.0408 0.0216
CAST/EiJ m 0.0381 0.0049 0.0477 0.0285
NOD/ShiLtJ f 0.1008 0.0051 0.1109 0.0908
NOD/ShiLtJ m 0.1002 0.0049 0.1099 0.0906
NZO/HlLtJ f 0.1659 0.0053 0.1764 0.1554
NZO/HlLtJ m 0.1532 0.0049 0.1628 0.1436
PWK/PhJ f 0.0628 0.0053 0.0733 0.0523
PWK/PhJ m 0.0659 0.0051 0.0759 0.0559
WSB/EiJ f 0.0308 0.0053 0.0413 0.0203
WSB/EiJ m 0.0348 0.0049 0.0444 0.0252


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0639 0.0036 0.0711 0.0568
A/J both 0.0732 0.0036 0.0803 0.066
C57BL/6J both 0.0868 0.0036 0.094 0.0797
CAST/EiJ both 0.0346 0.0034 0.0414 0.0278
NOD/ShiLtJ both 0.1005 0.0035 0.1075 0.0936
NZO/HlLtJ both 0.1595 0.0036 0.1667 0.1524
PWK/PhJ both 0.0644 0.0037 0.0716 0.0571
WSB/EiJ both 0.0328 0.0036 0.0399 0.0257




  GWAS USING LINEAR MIXED MODELS