Project measure / variable:   GMC15   PCT

ID, description, units MPD:56441   PCT   plateletcrit (PCT)   [%]  
Data set, strains GMC15   inbred w/CC8   8 strains     sex: both     age: 20-21wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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GMC15 - plateletcrit (PCT)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.505   % 0.592   %
Median of the strain means0.456   % 0.587   %
SD of the strain means± 0.180 ± 0.170
Coefficient of variation (CV)0.356 0.287
Min–max range of strain means0.290   –   0.844   % 0.382   –   0.846   %
Mean sample size per strain10.2   mice 11.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.3509 0.3509 14.0034 0.0003
strain 7 4.0122 0.5732 22.8733 < 0.0001
sex:strain 7 0.6603 0.0943 3.7644 0.0008
Residuals 160 4.0094 0.0251


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.29 0.0523   10 0.0165 0.18 0.23, 0.39 -1.2
129S1/SvImJ m 0.396 0.0438   12 0.0126 0.111 0.3, 0.45 -1.15
A/J f 0.611 0.123   10 0.0389 0.201 0.51, 0.89 0.59
A/J m 0.623 0.0761   12 0.022 0.122 0.52, 0.77 0.18
C57BL/6J f 0.618 0.063   10 0.0199 0.102 0.51, 0.75 0.63
C57BL/6J m 0.681 0.14   12 0.0403 0.205 0.39, 0.95 0.52
CAST/EiJ f 0.33 0.0512   12 0.0148 0.155 0.26, 0.43 -0.97
CAST/EiJ m 0.382 0.0447   12 0.0129 0.117 0.34, 0.49 -1.23
NOD/ShiLtJ f 0.463 0.217   10 0.0686 0.469 0.23, 0.88 -0.23
NOD/ShiLtJ m 0.846 0.23   11 0.0692 0.271 0.62, 1.35 1.5
NZO/HlLtJ f 0.844 0.202   10 0.064 0.24 0.62, 1.26 1.89
NZO/HlLtJ m 0.773 0.279   12 0.0805 0.361 0.38, 1.35 1.07
PWK/PhJ f 0.448 0.0818   10 0.0259 0.182 0.34, 0.59 -0.32
PWK/PhJ m 0.482 0.314   11 0.0947 0.652 0.16, 1.32 -0.65
WSB/EiJ f 0.434 0.0677   10 0.0214 0.156 0.3, 0.53 -0.39
WSB/EiJ m 0.551 0.135   12 0.039 0.245 0.17, 0.68 -0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.29 0.0501 0.3889 0.1911
129S1/SvImJ m 0.3958 0.0457 0.4861 0.3056
A/J f 0.611 0.0501 0.7099 0.5121
A/J m 0.6225 0.0457 0.7127 0.5323
C57BL/6J f 0.618 0.0501 0.7169 0.5191
C57BL/6J m 0.6808 0.0457 0.7711 0.5906
CAST/EiJ f 0.33 0.0457 0.4202 0.2398
CAST/EiJ m 0.3817 0.0457 0.4719 0.2914
NOD/ShiLtJ f 0.463 0.0501 0.5619 0.3641
NOD/ShiLtJ m 0.8464 0.0477 0.9406 0.7521
NZO/HlLtJ f 0.844 0.0501 0.9429 0.7451
NZO/HlLtJ m 0.7725 0.0457 0.8627 0.6823
PWK/PhJ f 0.448 0.0501 0.5469 0.3491
PWK/PhJ m 0.4818 0.0477 0.5761 0.3876
WSB/EiJ f 0.434 0.0501 0.5329 0.3351
WSB/EiJ m 0.5508 0.0457 0.6411 0.4606


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.3429 0.0339 0.4098 0.276
A/J both 0.6168 0.0339 0.6837 0.5498
C57BL/6J both 0.6494 0.0339 0.7163 0.5825
CAST/EiJ both 0.3558 0.0323 0.4196 0.292
NOD/ShiLtJ both 0.6547 0.0346 0.723 0.5864
NZO/HlLtJ both 0.8082 0.0339 0.8752 0.7413
PWK/PhJ both 0.4649 0.0346 0.5332 0.3966
WSB/EiJ both 0.4924 0.0339 0.5593 0.4255




  GWAS USING LINEAR MIXED MODELS