Project measure / variable:   GMC15   HCT

ID, description, units MPD:56421   HCT   hematocrit (HCT)   [%]  
Data set, strains GMC15   inbred w/CC8   8 strains     sex: both     age: 20-21wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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GMC15 - hematocrit (HCT)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means52.3   % 53.6   %
Median of the strain means52.5   % 52.4   %
SD of the strain means± 3.25 ± 5.25
Coefficient of variation (CV)0.0620 0.0979
Min–max range of strain means48.0   –   56.9   % 46.5   –   63.7   %
Mean sample size per strain10.2   mice 11.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 80.8663 80.8663 3.8765 0.0507
strain 7 2619.0273 374.1468 17.9356 < 0.0001
sex:strain 7 405.5573 57.9368 2.7773 0.0094
Residuals 161 3358.543 20.8605


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 56.9 6.14   10 1.94 0.108 49.0, 72.0 1.41
129S1/SvImJ m 56.5 2.76   12 0.796 0.0488 51.3, 60.9 0.55
A/J f 48.0 1.42   10 0.45 0.0297 45.5, 50.2 -1.34
A/J m 46.5 2.7   12 0.779 0.0581 39.8, 51.8 -1.36
C57BL/6J f 53.0 3.5   10 1.11 0.066 48.3, 59.1 0.2
C57BL/6J m 51.7 3.82   12 1.1 0.0739 46.3, 60.2 -0.37
CAST/EiJ f 51.6 1.73   12 0.499 0.0335 48.6, 54.7 -0.23
CAST/EiJ m 53.1 2.63   12 0.76 0.0496 50.5, 59.6 -0.1
NOD/ShiLtJ f 52.8 2.65   10 0.837 0.0501 48.3, 56.0 0.14
NOD/ShiLtJ m 56.6 5.0   12 1.44 0.0883 48.1, 63.2 0.56
NZO/HlLtJ f 56.1 3.59   10 1.14 0.064 48.6, 61.3 1.16
NZO/HlLtJ m 63.7 11.2   12 3.23 0.175 49.2, 85.9 1.92
PWK/PhJ f 52.3 5.83   10 1.84 0.111 45.5, 66.6 -0.01
PWK/PhJ m 50.4 4.6   11 1.39 0.0912 41.5, 57.1 -0.62
WSB/EiJ f 48.0 2.13   10 0.675 0.0445 42.4, 49.5 -1.34
WSB/EiJ m 50.6 2.55   12 0.737 0.0505 46.2, 55.0 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 56.85 1.4443 59.7022 53.9978
129S1/SvImJ m 56.4583 1.3185 59.0621 53.8546
A/J f 48.0 1.4443 50.8522 45.1478
A/J m 46.5 1.3185 49.1037 43.8963
C57BL/6J f 53.0 1.4443 55.8522 50.1478
C57BL/6J m 51.7417 1.3185 54.3454 49.1379
CAST/EiJ f 51.5833 1.3185 54.1871 48.9796
CAST/EiJ m 53.0917 1.3185 55.6954 50.4879
NOD/ShiLtJ f 52.8 1.4443 55.6522 49.9478
NOD/ShiLtJ m 56.5583 1.3185 59.1621 53.9546
NZO/HlLtJ f 56.1 1.4443 58.9522 53.2478
NZO/HlLtJ m 63.6667 1.3185 66.2704 61.0629
PWK/PhJ f 52.33 1.4443 55.1822 49.4778
PWK/PhJ m 50.4182 1.3771 53.1377 47.6987
WSB/EiJ f 47.96 1.4443 50.8122 45.1078
WSB/EiJ m 50.6167 1.3185 53.2204 48.0129


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 56.6542 0.9778 58.5851 54.7232
A/J both 47.25 0.9778 49.181 45.319
C57BL/6J both 52.3708 0.9778 54.3018 50.4399
CAST/EiJ both 52.3375 0.9323 54.1786 50.4964
NOD/ShiLtJ both 54.6792 0.9778 56.6101 52.7482
NZO/HlLtJ both 59.8833 0.9778 61.8143 57.9524
PWK/PhJ both 51.3741 0.9978 53.3446 49.4036
WSB/EiJ both 49.2883 0.9778 51.2193 47.3574




  GWAS USING LINEAR MIXED MODELS