Project measure / variable:   GMC14   lens_min_density_R

ID, description, units MPD:56332   lens_min_density_R   minimal density value of lens, Scheimpflug imaging   [%]  right eye  
Data set, strains GMC14   inbred w/CC8   8 strains     sex: both     age: 15-16wks
Procedure Scheimpflug imaging
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  STRAIN COMPARISON PLOT
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GMC14 - minimal density value of lens, Scheimpflug imaging right eye



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means5.21   % 5.14   %
Median of the strain means4.47   % 4.46   %
SD of the strain means± 1.44 ± 1.45
Coefficient of variation (CV)0.276 0.281
Min–max range of strain means4.24   –   8.26   % 4.00   –   7.96   %
Mean sample size per strain13.8   mice 12.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2678 0.2678 0.3315 0.5654
strain 7 413.1557 59.0222 73.0734 < 0.0001
sex:strain 7 2.4135 0.3448 0.4269 0.8847
Residuals 195 157.5038 0.8077


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.25 0.785   16 0.196 0.149 3.5, 5.9 0.03
129S1/SvImJ m 5.22 0.711   16 0.178 0.136 3.9, 6.3 0.06
A/J f 8.26 2.42   16 0.604 0.293 3.9, 15.3 2.12
A/J m 7.96 0.786   14 0.21 0.0988 7.1, 9.8 1.95
C57BL/6J f 4.35 0.322   16 0.0806 0.0741 3.9, 4.7 -0.6
C57BL/6J m 4.43 0.541   16 0.135 0.122 3.5, 5.5 -0.49
CAST/EiJ f 4.24 0.504   19 0.116 0.119 3.1, 5.1 -0.68
CAST/EiJ m 4.15 0.563   16 0.141 0.136 3.1, 5.5 -0.68
NOD/ShiLtJ f 6.41 0.749   18 0.177 0.117 5.1, 7.5 0.83
NOD/ShiLtJ m 6.71 0.973   16 0.243 0.145 5.1, 8.6 1.09
NZO/HlLtJ f 4.3 0.346   17 0.084 0.0806 3.9, 4.7 -0.64
NZO/HlLtJ m 4.14 0.401   17 0.0974 0.0971 3.5, 5.1 -0.69
PWK/PhJ f 4.3 0.327   4 0.163 0.076 3.9, 4.7 -0.64
PWK/PhJ m 4.5 0.283   2   0.2 0.0629 4.3, 4.7 -0.44
WSB/EiJ f 4.6 0.6   4 0.3 0.13 4.3, 5.5 -0.43
WSB/EiJ m 4.0 0.2   4 0.1 0.05 3.9, 4.3 -0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.25 0.2247 5.6931 4.8069
129S1/SvImJ m 5.225 0.2247 5.6681 4.7819
A/J f 8.2562 0.2247 8.6994 7.8131
A/J m 7.9571 0.2402 8.4309 7.4834
C57BL/6J f 4.35 0.2247 4.7931 3.9069
C57BL/6J m 4.425 0.2247 4.8681 3.9819
CAST/EiJ f 4.2368 0.2062 4.6435 3.8302
CAST/EiJ m 4.15 0.2247 4.5931 3.7069
NOD/ShiLtJ f 6.4111 0.2118 6.8289 5.9933
NOD/ShiLtJ m 6.7062 0.2247 7.1494 6.2631
NZO/HlLtJ f 4.3 0.218 4.7299 3.8701
NZO/HlLtJ m 4.1353 0.218 4.5652 3.7054
PWK/PhJ f 4.3 0.4494 5.1862 3.4138
PWK/PhJ m 4.5 0.6355 5.7533 3.2467
WSB/EiJ f 4.6 0.4494 5.4862 3.7138
WSB/EiJ m 4.0 0.4494 4.8862 3.1138


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.2375 0.1589 5.5508 4.9242
A/J both 8.1067 0.1645 8.431 7.7824
C57BL/6J both 4.3875 0.1589 4.7008 4.0742
CAST/EiJ both 4.1934 0.1525 4.4941 3.8927
NOD/ShiLtJ both 6.5587 0.1544 6.8632 6.2542
NZO/HlLtJ both 4.2176 0.1541 4.5216 3.9137
PWK/PhJ both 4.4 0.3892 5.1675 3.6325
WSB/EiJ both 4.3 0.3177 4.9267 3.6733




  GWAS USING LINEAR MIXED MODELS