Project measure / variable:   GMC14   eye_length_R

ID, description, units MPD:56322   eye_length_R   eye axial length   [mm]  right eye  
Data set, strains GMC14   inbred w/CC8   8 strains     sex: both     age: 15-16wks
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  STRAIN COMPARISON PLOT
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GMC14 - eye axial length right eye



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means3.52   mm 3.54   mm
Median of the strain means3.51   mm 3.54   mm
SD of the strain means± 0.103 ± 0.107
Coefficient of variation (CV)0.0292 0.0302
Min–max range of strain means3.36   –   3.68   mm 3.38   –   3.71   mm
Mean sample size per strain12.9   mice 12.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0413 0.0413 16.6544 0.0001
strain 7 2.1445 0.3064 123.631 < 0.0001
sex:strain 7 0.0143 0.002 0.8228 0.5694
Residuals 185 0.4584 0.0025


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.51 0.0296   16 0.00739 0.00842 3.46, 3.58 -0.07
129S1/SvImJ m 3.52 0.0307   16 0.00767 0.00871 3.46, 3.59 -0.19
A/J f 3.51 0.0665   14 0.0178 0.0189 3.37, 3.62 -0.07
A/J m 3.56 0.056   15 0.0145 0.0158 3.4, 3.67 0.19
C57BL/6J f 3.53 0.0623   15 0.0161 0.0177 3.35, 3.6 0.12
C57BL/6J m 3.55 0.0873   16 0.0218 0.0246 3.34, 3.66 0.09
CAST/EiJ f 3.36 0.0545   18 0.0128 0.0162 3.24, 3.47 -1.53
CAST/EiJ m 3.38 0.0331   15 0.00854 0.00977 3.29, 3.43 -1.5
NOD/ShiLtJ f 3.68 0.0503   16 0.0126 0.0136 3.62, 3.79 1.58
NOD/ShiLtJ m 3.71 0.0369   14 0.00985 0.00993 3.64, 3.76 1.59
NZO/HlLtJ f 3.63 0.029   16 0.00725 0.00798 3.57, 3.68 1.09
NZO/HlLtJ m 3.66 0.0283   16 0.00707 0.00773 3.61, 3.71 1.12
PWK/PhJ f 3.42 0.0422   4 0.0211 0.0123 3.38, 3.47 -0.95
PWK/PhJ m 3.48 0.0   2   0.0 0.0 3.48, 3.48 -0.56
WSB/EiJ f 3.5 0.0501   4 0.0251 0.0143 3.42, 3.54 -0.17
WSB/EiJ m 3.46 0.0266   4 0.0133 0.00768 3.43, 3.49 -0.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.5102 0.0124 3.5348 3.4857
129S1/SvImJ m 3.5234 0.0124 3.5479 3.4988
A/J f 3.5118 0.0133 3.538 3.4855
A/J m 3.5567 0.0129 3.582 3.5313
C57BL/6J f 3.5286 0.0129 3.554 3.5032
C57BL/6J m 3.5534 0.0124 3.5779 3.5288
CAST/EiJ f 3.3608 0.0117 3.384 3.3377
CAST/EiJ m 3.3837 0.0129 3.409 3.3583
NOD/ShiLtJ f 3.6847 0.0124 3.7092 3.6601
NOD/ShiLtJ m 3.7133 0.0133 3.7395 3.687
NZO/HlLtJ f 3.6326 0.0124 3.6571 3.608
NZO/HlLtJ m 3.6591 0.0124 3.6836 3.6345
PWK/PhJ f 3.4195 0.0249 3.4686 3.3704
PWK/PhJ m 3.482 0.0352 3.5514 3.4126
WSB/EiJ f 3.4967 0.0249 3.5459 3.4476
WSB/EiJ m 3.4575 0.0249 3.5066 3.4084


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.5168 0.0088 3.5342 3.4995
A/J both 3.5342 0.0092 3.5525 3.516
C57BL/6J both 3.541 0.0089 3.5586 3.5233
CAST/EiJ both 3.3722 0.0087 3.3894 3.3551
NOD/ShiLtJ both 3.699 0.0091 3.717 3.681
NZO/HlLtJ both 3.6458 0.0088 3.6632 3.6285
PWK/PhJ both 3.4507 0.0216 3.4933 3.4082
WSB/EiJ both 3.4771 0.0176 3.5118 3.4424




  GWAS USING LINEAR MIXED MODELS